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13_1_40cm_2_scaffold_9572

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_9572_1
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(1..627)
DNA (627bp) protein (209aa)
glycine dehydrogenase subunit 2; K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
glycine dehydrogenase subunit 2 n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037BBA2F
13_1_40cm_2_scaffold_9572_2
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(627..1988)
DNA (1362bp) protein (454aa)
gcvPA; glycine dehydrogenase [decarboxylating] subunit 1 (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) (EC:1.4.4.2) Tax=GWC2_Pelobacteraceae_58_13_curated
glycine dehydrogenase (EC:1.4.4.2)
Probable glycine dehydrogenase [decarboxylating] subunit 1 id=4385686 bin=GWC2_Pelobacter_58_13 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good + rbh
13_1_40cm_2_scaffold_9572_3
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(1990..2394)
DNA (405bp) protein (135aa)
gcvH; glycine cleavage system H protein; K02437 glycine cleavage system H protein id=15193252 bin=GWC2_NOV_55_46 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_NOV_55_46 organism_group=Proteobacteria
glycine cleavage system H protein
Tax=BJP_08E140C01_Coriobacteriales_62_12
13_1_40cm_2_scaffold_9572_4
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

comp(2406..3512)
DNA (1107bp) protein (369aa)
gcvT; glycine cleavage system T-protein (aminomethyltransferase) (EC:2.1.2.10) id=24429616 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
gcvT; glycine cleavage system T-protein (aminomethyltransferase) (EC:2.1.2.10) Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
glycine cleavage system protein T
13_1_40cm_2_scaffold_9572_5
Caldisericum exile, Caldisericum, Caldisericales, Caldisericia, Caldiserica, Bacteria

Not on your lists

3695..5866
DNA (2172bp) protein (724aa)
Type 4 fimbrial assembly protein PilB n=1 Tax=Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) RepID=I0GLG1_CALEA
pilB; type 4 fimbrial assembly protein PilB
Type 4 fimbrial assembly protein PilB {ECO:0000313|EMBL:BAL81598.1}; TaxID=511051 species="Bacteria; Caldiserica; Caldisericia; Caldisericales; Caldisericaceae; Caldisericum.;" source="Caldisericum ex
13_1_40cm_2_scaffold_9572_6
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(5829..7388)
DNA (1560bp) protein (520aa)
hemD; porphyrin biosynthesis protein HemD (EC:2.1.1.107 4.2.1.75)
Porphyrin biosynthesis protein HemD {ECO:0000313|EMBL:CBK42449.1}; EC=2.1.1.107 {ECO:0000313|EMBL:CBK42449.1};; EC=4.2.1.75 {ECO:0000313|EMBL:CBK42449.1};; TaxID=330214 species="Bacteria; Nitrospirae;
Porphyrin biosynthesis protein HemD n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PGR2_9BACT
13_1_40cm_2_scaffold_9572_7
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(7385..7729)
DNA (345bp) protein (115aa)
porphobilinogen deaminase; K01749 hydroxymethylbilane synthase [EC:2.5.1.61] Tax=RBG_16_Chloroflexi_50_11_curated
porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase n=1 Tax=Thermincola potens (strain JR) RepID=D5XEC8_THEPJ
13_1_40cm_2_scaffold_9572_8
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(7941..8270)
DNA (330bp) protein (110aa)
hydroxymethylbilane synthase (EC:2.5.1.61)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAM
Porphobilinogen deaminase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHZ1_CHLTF
13_1_40cm_2_scaffold_9572_9
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8278..9621)
DNA (1344bp) protein (448aa)
hemA; glutamyl-tRNA reductase (EC:1.2.1.-); K02492 glutamyl-tRNA reductase [EC:1.2.1.70] Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
hemA; glutamyl-tRNA reductase (GluTR) (EC:1.2.1.70)
Glutamyl-tRNA reductase id=2216942 bin=GWA2_Deltaproteo_65_63 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
13_1_40cm_2_scaffold_9572_10
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(9625..10413)
DNA (789bp) protein (263aa)
cytochrome c biogenesis protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Cytochrome c assembly protein id=4531936 bin=GWC2_Pelobacter_58_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
cytochrome C biogenesis protein ResC
13_1_40cm_2_scaffold_9572_11
Thermoanaerobacter thermohydrosulfuricus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

10575..11243
DNA (669bp) protein (223aa)
HAD-superfamily hydrolase {ECO:0000313|EMBL:EMT39283.1}; EC=3.1.3.18 {ECO:0000313|EMBL:EMT39283.1};; TaxID=1198630 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacter
HAD-superfamily hydrolase, subfamily IA, variant 1, partial n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4115
HAD-superfamily hydrolase
13_1_40cm_2_scaffold_9572_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11262..11825)
DNA (564bp) protein (188aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_2_scaffold_9572_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11861..12175)
DNA (315bp) protein (105aa)
ComEA protein; K02237 competence protein ComEA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
competence protein ComEA helix-hairpin-helix repeat protein; K02237 competence protein ComEA id=16867208 bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
competence protein ComEA-like protein
13_1_40cm_2_scaffold_9572_14
unknown

Not on your lists

12314..12670
DNA (357bp) protein (119aa)

This feature has no annotations

13_1_40cm_2_scaffold_9572_15
unknown

Not on your lists

12667..12861
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_2_scaffold_9572_16
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(12959..14500)
DNA (1542bp) protein (514aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:CBE70173.1}; EC=1.1.1.95 {ECO:0000313|EMBL:CBE70173.1};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" so
D-3-phosphoglycerate dehydrogenase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMQ1_9BACT
13_1_40cm_2_scaffold_9572_17

Not on your lists

comp(14514..15542)
DNA (1029bp) protein (343aa)
Aminotransferase class V n=1 Tax=uncultured prokaryote RepID=H5SIQ3_9ZZZZ
Aminotransferase class V {ECO:0000313|EMBL:BAL56039.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
aminotransferase
13_1_40cm_2_scaffold_9572_18
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(15557..16888)
DNA (1332bp) protein (444aa)
peptidase M50, membrane-associated zinc metallopeptidase; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
rseP; RIP metalloprotease RseP (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] id=16846011 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
membrane-associated zinc metalloprotease
13_1_40cm_2_scaffold_9572_19
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16885..18063)
DNA (1179bp) protein (393aa)
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase; K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=GWD2_Desulfuromonadales_61_12_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIW9_CHLTF
13_1_40cm_2_scaffold_9572_20
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(18063..18203)
DNA (141bp) protein (47aa)
CDP-diglyceride synthetase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracido
Phosphatidate cytidylyltransferase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHE1_CHLTF
13_1_40cm_2_scaffold_9572_21
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(18197..18838)
DNA (642bp) protein (214aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41); K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4U1_9BACT
13_1_40cm_2_scaffold_9572_22
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(18872..19063)
DNA (192bp) protein (64aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] id=12556752 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Displaying 22 items

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