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13_1_40cm_2_scaffold_4404_10

Organism: 13_1_40CM_2_Acidobacteria_68_10

partial RP 40 / 55 MC: 1 BSCG 39 / 51 ASCG 9 / 38
Location: comp(8981..10441)

Top 3 Functional Annotations

Value Algorithm Source
rpoN; RNA polymerase sigma-54 factor RpoN; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 57.3
  • Coverage: 482.0
  • Bit_score: 552
  • Evalue 7.70e-154
sigma-54 (RpoN); K03092 RNA polymerase sigma-54 factor id=12554063 bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? similarity UNIREF
DB: UNIREF100
  • Identity: 53.2
  • Coverage: 485.0
  • Bit_score: 539
  • Evalue 3.70e-150
rpoN; RNA polymerase sigma-54 factor RpoN similarity KEGG
DB: KEGG
  • Identity: 48.6
  • Coverage: 490.0
  • Bit_score: 444
  • Evalue 3.50e-122

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Taxonomy

R_Acidobacteria_67_21 → Acidobacteria → Bacteria

Sequences

DNA sequence
Length: 1461
ATGGCACTCGAGCAAAAGCTCAATCTGCGGATGACGCAGAGGCTCATCATGACGCCGTCGCTGCAGCAGGCGATCAAGCTGCTGCAGATGACCAAGCTCGAGCTGCAGGAAGAGATCACCCAGGAGCTGACCGAGAACCCTCTCCTGGAGGAGCTCCAGGAGGGGAACTCAGAGACCGAGAAGACCGAGGGCGAGGAGACGCCTGCGACCGACGCCGTTCCCGCGGGCGATTCCGAGGCCCCTGCGGAGGAGCGCGAAAAGGATTCCTTCGACGAAATCGATTACGAATCGTATTTCCAGGACTACATGGATCTCAGCTACCGCCCGCAGGCGCCGGCCGAGGAAATCGAAGCGCCGCCTCTCGAGAATATCCTGAGCCGGCCGCAGAGCCTGGGCGATTACCTCCACTGGCAGCTCGACATGAGCATCGTGCCGGGAACGCAGAAGGAGATCGGCCGGGCCATCATCGGCAACCTGGACGACGACGGCTATCTGCGTGTGTCGCTCGAGGACATCGCCGCCATGGGGCCGTGGTCCCCGGAAGACGTGGAGCACGCCCTGCACTTCGTGCAGGAGTTCGATCCGCCCGGTGTGGCGGCGCGCGATCTCAAGGAGTGCCTCCTGATCCAGCTGGCGTTCCATGACATGGAGGGGACGCACGCGGAGACGATTGTCAAGGACCACATGGTCCTCCTGCAGGGTCGCAAATTCAAGGAGCTGGCGCAGGCGCTCGGGTGCGGCGTGGAGGAGGTCATGCACTACGTCGACACCATCCGCCACCTGGACCCGAAGCCCGGCAAGAAATACAACGCCGGAAGCAACAACTACGTCATCCCCGATGTGTACGTCCTGAAGGTCGACAAGGGATACACCATCGTGCTGAACGAGGAGGGCCTGCCGCGCCTGCGGATCAGCCCCTTTTACCGTCGCATGATCGATCGGAACAACACCGACGTGACACGGGAGACGCGCGAATACGTGCGCGAGAAGTTCCGCTCCGCCTTCAGGCTGATCAAGAGCCTGGAGGAGCGGCAGCGCACCATCTACAAGGTGGCCAGGAGCATCGTGAAGCACCAGCAGGGCTTCCTGGATTTCGGGTACGAGCACCTCCGGCCCCTCATCCTGAAGGACGTGGCGGACGACATCGGCATGCACGAGTCGACCGTCAGTCGCGTGGTCAACCACAAGTACATGCATACCCCGCGCGGCCTGTACGAAATGAAGTTCTTTTTCCATTCGAGCATCAGCTCCACGCAGGGCCAGGACGTCTCCTCGCTGGCCGTCAAGGAGCGCATCAAGAAAGTCGTGAGCGAAGAGGATCCTCGGCGGCCGCTCTCCGACGCCGCCATCGTGCAGATCCTGAGCGACGACGGTCTGCGCATCGCTCGGCGAACCGTGGCCAAGTACCGCGAGGAGCTGCGCATCCCGTCCTCCAACGAGAGACGCCAGGGCTTCCACTGA
PROTEIN sequence
Length: 487
MALEQKLNLRMTQRLIMTPSLQQAIKLLQMTKLELQEEITQELTENPLLEELQEGNSETEKTEGEETPATDAVPAGDSEAPAEEREKDSFDEIDYESYFQDYMDLSYRPQAPAEEIEAPPLENILSRPQSLGDYLHWQLDMSIVPGTQKEIGRAIIGNLDDDGYLRVSLEDIAAMGPWSPEDVEHALHFVQEFDPPGVAARDLKECLLIQLAFHDMEGTHAETIVKDHMVLLQGRKFKELAQALGCGVEEVMHYVDTIRHLDPKPGKKYNAGSNNYVIPDVYVLKVDKGYTIVLNEEGLPRLRISPFYRRMIDRNNTDVTRETREYVREKFRSAFRLIKSLEERQRTIYKVARSIVKHQQGFLDFGYEHLRPLILKDVADDIGMHESTVSRVVNHKYMHTPRGLYEMKFFFHSSISSTQGQDVSSLAVKERIKKVVSEEDPRRPLSDAAIVQILSDDGLRIARRTVAKYREELRIPSSNERRQGFH*