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13_1_40cm_2_scaffold_4404

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_4404_1
unknown

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1..156
DNA (156bp) protein (52aa)

This feature has no annotations

13_1_40cm_2_scaffold_4404_2
Desulfonatronum thiodismutans, Desulfonatronum, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(198..2849)
DNA (2652bp) protein (884aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|H
Valine--tRNA ligase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AD52_THEID
valyl-tRNA synthetase
13_1_40cm_2_scaffold_4404_3
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(2921..4207)
DNA (1287bp) protein (429aa)
Response regulator receiver protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAD7_ANADF
response regulator Tax=RBG_13_Acidobacteria_68_16_curated
response regulator receiver protein
13_1_40cm_2_scaffold_4404_4
unknown

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comp(4182..4706)
DNA (525bp) protein (175aa)

This feature has no annotations

13_1_40cm_2_scaffold_4404_5
unknown

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comp(4703..5089)
DNA (387bp) protein (129aa)

This feature has no annotations

13_1_40cm_2_scaffold_4404_6
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5148..5558)
DNA (411bp) protein (137aa)
Cobalamin B12-binding domain protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M430_GEODF
cobalamin B12-binding domain-containing protein
(R)-methylmalonyl-CoA mutase, adenosylcobamide-binding subunit {ECO:0000313|EMBL:ACM21485.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; G
13_1_40cm_2_scaffold_4404_7
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5561..7252)
DNA (1692bp) protein (564aa)
methylmalonyl-CoA mutase; K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RBG_13_Deltaproteobacteria_61_14_curated
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGL4_CHLTF
13_1_40cm_2_scaffold_4404_8
GWC2_Deltaproteobacteria_65_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7254..8399)
DNA (1146bp) protein (382aa)
acyl-CoA dehydrogenase domain-containing protein; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1] Tax=GWC2_Deltaproteobacteria_65_14_curated
Acyl-CoA dehydrogenase domain protein id=3661231 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
CaiA; acyl-CoA dehydrogenase
13_1_40cm_2_scaffold_4404_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(8404..8949)
DNA (546bp) protein (182aa)
Protein DR_1082 n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MES2_9BACT
Ribosomal subunit interface protein {ECO:0000313|EMBL:CDM66192.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
protein DR_1082
13_1_40cm_2_scaffold_4404_10
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(8981..10441)
DNA (1461bp) protein (487aa)
rpoN; RNA polymerase sigma-54 factor RpoN; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
sigma-54 (RpoN); K03092 RNA polymerase sigma-54 factor id=12554063 bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpoN; RNA polymerase sigma-54 factor RpoN
13_1_40cm_2_scaffold_4404_11
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(10503..11276)
DNA (774bp) protein (258aa)
ABC transporter related protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8UZA8_TERSS
ABC transporter-like protein
ABC transporter related protein {ECO:0000313|EMBL:ADV82126.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain
13_1_40cm_2_scaffold_4404_12
unknown

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comp(11351..12964)
DNA (1614bp) protein (538aa)

This feature has no annotations

13_1_40cm_2_scaffold_4404_13
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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comp(12973..13758)
DNA (786bp) protein (262aa)
short chain enoyl-CoA hydratase; K01715 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
crt; 3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55)
Enoyl-CoA hydratase id=4714698 bin=GWA2_Ignavibacteria_55_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
13_1_40cm_2_scaffold_4404_14
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(13768..14592)
DNA (825bp) protein (275aa)
3-hydroxyacyl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISD6_KORVE
3-hydroxyacyl-CoA dehydrogenase
13_1_40cm_2_scaffold_4404_15
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(14633..15847)
DNA (1215bp) protein (405aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase n=1 Tax=uncultured marine group II euryarchaeote EF100_57A08 RepID=A9QP30_9EURY id=5224563 bin=16ft_combo_ws3_JS1 species=uncultured marine group II euryarchaeote EF100_57A08 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
13_1_40cm_2_scaffold_4404_16
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(15844..16632)
DNA (789bp) protein (263aa)
IstB domain-containing protein ATP-binding protein; K02315 DNA replication protein DnaC Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
DNA replication protein, DNAC-like; K02315 DNA replication protein DnaC id=12555124 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA replication protein, DNAC-like
13_1_40cm_2_scaffold_4404_17
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(16704..17567)
DNA (864bp) protein (288aa)
RNA polymerase sigma-32 subunit RpoH; K03086 RNA polymerase primary sigma factor Tax=RBG_13_OP8X_37_8_curated
hypothetical protein id=8266551 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
RNA polymerase sigma-70 subunit RpoD
13_1_40cm_2_scaffold_4404_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(17571..18005)
DNA (435bp) protein (145aa)
merR; MerR family transcriptional regulator; K13640 MerR family transcriptional regulator, heat shock protein HspR Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
transcriptional regulator, MerR family; K13640 MerR family transcriptional regulator, heat shock protein HspR id=17133888 bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
merR; MerR family transcriptional regulator
13_1_40cm_2_scaffold_4404_19
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

comp(17989..19113)
DNA (1125bp) protein (375aa)
hypothetical protein id=8266553 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK Tax=RBG_16_RIF03_38_10_curated
chaperone DnaJ
13_1_40cm_2_scaffold_4404_20
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19113..19586)
DNA (474bp) protein (158aa)
Heat shock protein Hsp20 Tax=RBG_13_Deltaproteobacteria_52_11_curated
Heat shock protein Hsp20 id=14623378 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin5_DeltaP organism_group=Deltaproteobacteria
Heat shock protein Hsp20
13_1_40cm_2_scaffold_4404_21
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(19583..20701)
DNA (1119bp) protein (373aa)
molecular chaperone DnaK n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036C276F
dnaK; molecular chaperone DnaK; K04043 molecular chaperone DnaK Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
dnaK; molecular chaperone DnaK
Displaying 21 items

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