ggKbase home page

13_1_20cm_2_scaffold_2539

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_2539_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1..426)
DNA (426bp) protein (142aa)
RNA helicase n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B67492
DNA/RNA helicase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
DEAD/DEAH box helicase domain protein
13_1_20cm_2_scaffold_2539_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(559..777)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C7Q4_DESTA
translation initiation factor IF-1 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
translation initiation factor IF-1
13_1_20cm_2_scaffold_2539_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(815..3325)
DNA (2511bp) protein (837aa)
AMP-dependent synthetase and ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMD0_KORVE
AMP-dependent synthetase and ligase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
AMP-dependent synthetase/ligase
13_1_20cm_2_scaffold_2539_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3465..4388
DNA (924bp) protein (308aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IHK7_ANADE
NAD-dependent epimerase/dehydratase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
NAD-dependent epimerase/dehydratase
13_1_20cm_2_scaffold_2539_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(4413..5054)
DNA (642bp) protein (214aa)
endopeptidase Clp; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Lactobacillus sanfranciscensis (strain TMW 1.1304) RepID=G2KVF0_LACSM
13_1_20cm_2_scaffold_2539_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(5083..6168)
DNA (1086bp) protein (362aa)
UPI0003D5EB09 related cluster n=1 Tax=unknown RepID=UPI0003D5EB09
cax-1; calcium/proton exchanger; K07300 Ca2+:H+ antiporter Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
CaCA family calcium/proton antiporter
13_1_20cm_2_scaffold_2539_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(6297..6476)
DNA (180bp) protein (60aa)
Mandelate racemase/muconate lactonizing enzyme,N-terminal domain protein n=1 Tax=mine drainage metagenome RepID=E6Q0D4_9ZZZZ
Mandelate racemase/muconate lactonizing enzyme,N-terminal domain protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_20cm_2_scaffold_2539_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6679..8100)
DNA (1422bp) protein (474aa)
polynucleotide adenylyltransferase; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
polynucleotide adenylyltransferase n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625F20
polynucleotide adenylyltransferase
13_1_20cm_2_scaffold_2539_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

8361..9491
DNA (1131bp) protein (377aa)
acetylornithine deacetylase; K01438 acetylornithine deacetylase [EC:3.5.1.16] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
acetylornithine deacetylase n=1 Tax=Deinococcus apachensis RepID=UPI0003612D85
argE; Acetylornithine deacetylase
13_1_20cm_2_scaffold_2539_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(9619..9921)
DNA (303bp) protein (101aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_20cm_2_scaffold_2539_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10160..11098)
DNA (939bp) protein (313aa)
proline dehydrogenase; K00318 proline dehydrogenase [EC:1.5.99.8] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Proline dehydrogenase 1 n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EG92_9CHLR
proline dehydrogenase
13_1_20cm_2_scaffold_2539_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11098..12186)
DNA (1089bp) protein (363aa)
glycerol-3-phosphate acyltransferase (EC:2.3.1.15); K00631 glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Glycerol-3-phosphate acyltransferase n=1 Tax=Aeromonas salmonicida subsp. pectinolytica 34mel RepID=T0PFS3_AERSA
plsB; glycerol-3-phosphate acyltransferase
13_1_20cm_2_scaffold_2539_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(12272..13285)
DNA (1014bp) protein (338aa)
isocitrate dehydrogenase, NAD-dependent, mitochondrial type (EC:1.1.1.41); K00030 isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
isocitrate dehydrogenase, NAD-dependent, mitochondrial type (EC:1.1.1.41)
Isocitrate dehydrogenase, NAD-dependent, mitochondrial type n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LLB7_CHLTF rbh
13_1_20cm_2_scaffold_2539_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(13282..13596)
DNA (315bp) protein (105aa)
id=12556708 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_20cm_2_scaffold_2539_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

13633..14520
DNA (888bp) protein (296aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Displaying 15 items

View Taxonomy