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13_1_20cm_2_scaffold_4538

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_4538_1
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..247)
-----------------
DNA (246bp)
protein (82aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI000367F5C5
Uncharacterized protein {ECO:0000313|EMBL:CCJ08964.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (s
hypothetical protein
13_1_20cm_2_scaffold_4538_2
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(320..1432)
-----------------
DNA (1113bp)
protein (371aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|SAAS:SAAS00094434};; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacte
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036DCCD4
S-adenosylmethionine tRNA ribosyltransferase-isomerase protein
13_1_20cm_2_scaffold_4538_3
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1429..2085)
-----------------
DNA (657bp)
protein (219aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037EEFDF
Short-chain dehydrogenase {ECO:0000313|EMBL:ESW78989.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium s
short-chain dehydrogenase protein
13_1_20cm_2_scaffold_4538_4
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2350..2976)
-----------------
DNA (627bp)
protein (209aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASU8_RUBXD
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABG05530.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae;
two component LuxR family transcriptional regulator
13_1_20cm_2_scaffold_4538_5
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2973..4172)
-----------------
DNA (1200bp)
protein (400aa)
GAF sensor signal transduction histidine kinase {ECO:0000313|EMBL:ABG05529.1}; EC=2.7.3.- {ECO:0000313|EMBL:ABG05529.1};; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales
GAF sensor signal transduction histidine kinase (EC:2.7.3.-)
GAF sensor signal transduction histidine kinase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASU9_RUBXD
13_1_20cm_2_scaffold_4538_6
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4214..5389)
-----------------
DNA (1176bp)
protein (392aa)
transferase n=1 Tax=Actinopolymorpha alba RepID=UPI00036C67C5 rbh
Uncharacterized protein {ECO:0000313|EMBL:CCG04814.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strai
hypothetical protein
13_1_20cm_2_scaffold_4538_7
unknown

Not on your lists

comp(5412..5540)
-----------------
DNA (129bp)
protein (43aa)

This feature has no annotations

13_1_20cm_2_scaffold_4538_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5562..6095)
-----------------
DNA (534bp)
protein (178aa)
Transcriptional regulator n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGN9_9BACT
Transcriptional regulator {ECO:0000313|EMBL:EEF61090.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pe
ArsR family transcriptional regulator
13_1_20cm_2_scaffold_4538_9
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

6428..9307
-----------------
DNA (2880bp)
protein (960aa)
TonB-dependent receptor n=1 Tax=uncultured Acidobacteria bacterium A12 RepID=F8TTM0_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein
13_1_20cm_2_scaffold_4538_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

9737..10801
-----------------
DNA (1065bp)
protein (355aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000315EB83
amidohydrolase 2 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
amidohydrolase 2
13_1_20cm_2_scaffold_4538_11
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

11351..13678
-----------------
DNA (2328bp)
protein (776aa)
hypothetical protein n=1 Tax=Enterovibrio norvegicus RepID=UPI0003126B33
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein
13_1_20cm_2_scaffold_4538_12
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

13682..14131
-----------------
DNA (450bp)
protein (150aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WF46_9SPHN
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
13_1_20cm_2_scaffold_4538_13
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14277..15734
-----------------
DNA (1458bp)
protein (486aa)
Integrin alpha beta-propellor repeat protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LMU6_HALO1 rbh
Integrin alpha beta-propellor repeat protein {ECO:0000313|EMBL:ACY13317.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.
Integrin alpha beta-propellor repeat-containing protein
13_1_20cm_2_scaffold_4538_14
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

16370..16969
-----------------
DNA (600bp)
protein (200aa)
NHL repeat containing protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYT3_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein
13_1_20cm_2_scaffold_4538_15
unknown

Not on your lists

comp(17224..17505)
-----------------
DNA (282bp)
protein (94aa)

This feature has no annotations

13_1_20cm_2_scaffold_4538_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

18081..19895
-----------------
DNA (1815bp)
protein (605aa)
spermine synthase; K00797 spermidine synthase [EC:2.5.1.16] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI000369CF4C
spermine synthase
13_1_20cm_2_scaffold_4538_17
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

20008..21177
-----------------
DNA (1170bp)
protein (390aa)
peptidase M28 n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B5A5CC
Peptidase M28 {ECO:0000313|EMBL:ABJ87241.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacte
peptidase M28
13_1_20cm_2_scaffold_4538_18
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

21197..21616
-----------------
DNA (420bp)
protein (140aa)
peptidase M28 n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B5A5CC
Peptidase M28 {ECO:0000313|EMBL:ADV84812.1}; Flags: Precursor;; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain
peptidase M28
13_1_20cm_2_scaffold_4538_19
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

21753..24989
-----------------
DNA (3237bp)
protein (1079aa)
TonB-dependent receptor n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SCH3_9BACT
TonB-dependent receptor {ECO:0000313|EMBL:BAL53859.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
TonB-dependent receptor
13_1_20cm_2_scaffold_4538_20
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

25012..26316
-----------------
DNA (1305bp)
protein (435aa)
Major facilitator superfamily MFS_1 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AC6_SOLUE
major facilitator transporter Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
major facilitator transporter
13_1_20cm_2_scaffold_4538_21
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

26313..26966
-----------------
DNA (654bp)
protein (218aa)
ABC transporter; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00037E19FA
ABC transporter ATP-binding protein
13_1_20cm_2_scaffold_4538_22
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

27270..27455
-----------------
DNA (186bp)
protein (62aa)
tartronate semialdehyde reductase n=1 Tax=Nocardiopsis prasina RepID=UPI00036F64DD
6-phosphogluconate dehydrogenase protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
putative 3-hydroxyisobutyrate dehydrogenase
13_1_20cm_2_scaffold_4538_23
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27452..27631
-----------------
DNA (180bp)
protein (60aa)
6-phosphogluconate dehydrogenase protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
13_1_20cm_2_scaffold_4538_24
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

27995..28435
-----------------
DNA (441bp)
protein (147aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
13_1_20cm_2_scaffold_4538_25
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

28432..29232
-----------------
DNA (801bp)
protein (267aa)
Uncharacterized conserved protein n=1 Tax=uncultured Oceanospirillales bacterium HF4000_23O15 RepID=E0XW08_9GAMM
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
cell surface protein
13_1_20cm_2_scaffold_4538_26
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

29492..30943
-----------------
DNA (1452bp)
protein (484aa)
TonB-dependent receptor n=1 Tax=uncultured Acidobacteria bacterium A12 RepID=F8TTM0_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein
Displaying 26 items

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