ggKbase home page

13_1_20cm_2_scaffold_6086

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_6086_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3..377)
DNA (375bp) protein (125aa)
Translation initiation factor IF-2 n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0KC87_SACES
translation initiation factor 2; K02519 translation initiation factor IF-2 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
infB; Translation initiation factor IF-2
13_1_20cm_2_scaffold_6086_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(381..1805)
DNA (1425bp) protein (475aa)
NusA antitermination factor n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZKG8_TERRK
nusA; transcription termination factor NusA; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
NusA antitermination factor
13_1_20cm_2_scaffold_6086_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1806..2255)
DNA (450bp) protein (150aa)
Ribosome maturation factor RimP n=1 Tax=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) RepID=RIMP_THEP1
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein
13_1_20cm_2_scaffold_6086_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(2358..3803)
DNA (1446bp) protein (482aa)
30S ribosomal protein S12P methylthiotransferase; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIR9_CHLTF
30S ribosomal protein S12P methylthiotransferase
13_1_20cm_2_scaffold_6086_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3913..5208)
DNA (1296bp) protein (432aa)
asparaginyl-tRNA synthetase (EC:6.1.1.22); K01893 asparaginyl-tRNA synthetase [EC:6.1.1.22] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
emi:Emin_0799 asparaginyl-tRNA synthetase; K01893 asparaginyl-tRNA synthetase [EC:6.1.1.22] alias=ACD20_58194.49390.14G0010,ACD20_58194.49390.14_10,ACD20_C00083G00010 id=19781 tax=ACD20 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
asnS; asparaginyl-tRNA synthetase (EC:6.1.1.22)
13_1_20cm_2_scaffold_6086_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(5190..5852)
DNA (663bp) protein (221aa)
xylose isomerase-like TIM barrel Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_20cm_2_scaffold_6086_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(5958..7082)
DNA (1125bp) protein (375aa)
putative phosphotransferase (EC:2.7.1.-); K07102 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Aminoglycoside phosphotransferase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C3Q4_DESTA
aminoglycoside phosphotransferase
13_1_20cm_2_scaffold_6086_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(7121..8029)
DNA (909bp) protein (303aa)
nucleoside-diphosphate-sugar pyrophosphorylase (EC:2.7.7.13); K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K01840 phosphomannomutase [EC:5.4.2.8] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria
nucleoside-diphosphate-sugar pyrophosphorylase (EC:2.7.7.13)
Mannose-1-phosphate guanylyltransferase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFU0_9BACT
13_1_20cm_2_scaffold_6086_9
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(8055..9086)
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B6F036
hypothetical protein Tax=RBG_16_Chloroflexi_63_12_curated
hypothetical protein
13_1_20cm_2_scaffold_6086_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(9083..10504)
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Geobacter sp. (strain M21) RepID=C6E4H9_GEOSM
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_1_20cm_2_scaffold_6086_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(10578..12155)
DNA (1578bp) protein (526aa)
endopeptidase (EC:3.4.21.-)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K1YHV7_9BACT
putative Serine protease do-like precursor Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_20cm_2_scaffold_6086_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(12220..13434)
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036A7FD3
Xaa-Pro aminopeptidase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Xaa-Pro aminopeptidase
13_1_20cm_2_scaffold_6086_13
unknown

Not on your lists

comp(13534..14058)
DNA (525bp) protein (175aa)

This feature has no annotations

13_1_20cm_2_scaffold_6086_14
unknown

Not on your lists

comp(14206..15438)
DNA (1233bp) protein (411aa)

This feature has no annotations

13_1_20cm_2_scaffold_6086_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

15955..16251
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67RW3_SYMTH
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_20cm_2_scaffold_6086_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(16420..16956)
DNA (537bp) protein (179aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_20cm_2_scaffold_6086_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(17058..17516)
DNA (459bp) protein (153aa)
id=12555506 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_20cm_2_scaffold_6086_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

17536..17955
DNA (420bp) protein (140aa)
glyoxalase n=1 Tax=Spongiibacter tropicus RepID=UPI0003B6235F
glyoxalase/bleomycin resistance protein/dioxygenase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
glyoxalase/bleomycin resistance protein/dioxygenase
13_1_20cm_2_scaffold_6086_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(18031..20187)
DNA (2157bp) protein (719aa)
glgP; glycogen phosphorylase (EC:2.4.1.1); K00688 starch phosphorylase [EC:2.4.1.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
glgP; glycogen phosphorylase (EC:2.4.1.1)
Glycogen phosphorylase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCT3_9BACT
13_1_20cm_2_scaffold_6086_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(20184..21212)
DNA (1029bp) protein (343aa)
pyridoxal-5'-phosphate-dependent protein subunit beta; K01754 threonine dehydratase [EC:4.3.1.19] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q025L3_SOLUE
Pyridoxal-5'-phosphate-dependent protein beta subunit
13_1_20cm_2_scaffold_6086_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(21332..21778)
DNA (447bp) protein (149aa)
nucleoside 2-deoxyribosyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
nucleoside 2-deoxyribosyltransferase alias=RBG9_7_75,RBG9_C00007G00075 id=1244615 tax=RBG9 species=Methanohalophilus mahii genus=Methanohalophilus taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota
nucleoside 2-deoxyribosyltransferase
13_1_20cm_2_scaffold_6086_22
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(21789..22976)
DNA (1188bp) protein (396aa)
L-aminopeptidase/D-esterase n=2 Tax=Singulisphaera acidiphila RepID=L0DHN9_SINAD rbh
L-aminopeptidase/D-esterase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
L-aminopeptidase/D-esterase
13_1_20cm_2_scaffold_6086_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

23092..23616
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000376778A
Phosphoesterase family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
phosphoesterase
Displaying 23 items

View Taxonomy