ggKbase home page

13_1_20cm_2_scaffold_2035

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_2035_1
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

1..390
DNA (390bp) protein (130aa)
Hypothetical conserved protein n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SBT5_9BACT
Uncharacterized protein Tax=RBG_16_KB1_OP1_55_9_curated
13_1_20cm_2_scaffold_2035_2
unknown

Not on your lists

781..1185
DNA (405bp) protein (135aa)

This feature has no annotations

13_1_20cm_2_scaffold_2035_3
unknown

Not on your lists

comp(1305..1451)
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_20cm_2_scaffold_2035_4
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

1518..2282
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003680020
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein
13_1_20cm_2_scaffold_2035_5
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(2288..4390)
DNA (2103bp) protein (701aa)
ATP-dependent DNA helicase Rep; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
ATP-dependent DNA helicase, Rep family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029V8_SOLUE
ATP-dependent DNA helicase Rep
13_1_20cm_2_scaffold_2035_6
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4706..5065
DNA (360bp) protein (120aa)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
13_1_20cm_2_scaffold_2035_7

Not on your lists

5459..6349
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QK49_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI07616.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
13_1_20cm_2_scaffold_2035_8
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6362..7729)
DNA (1368bp) protein (456aa)
hypothetical protein n=1 Tax=Caldibacillus debilis RepID=UPI000381BE4C rbh
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate
glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase
13_1_20cm_2_scaffold_2035_9
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(7823..8788)
DNA (966bp) protein (322aa)
Putative gluconeogenesis factor n=1 Tax=Halanaerobium hydrogeniformans RepID=E4RN69_HALHG
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
13_1_20cm_2_scaffold_2035_10
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(8795..9535)
DNA (741bp) protein (247aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YE1_SOLUE
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_1_20cm_2_scaffold_2035_11
Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9699..9959)
DNA (261bp) protein (87aa)
Carbon storage regulator homolog n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AY67_CLOA9
csrA; carbon storage regulator
13_1_20cm_2_scaffold_2035_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

10077..11267
DNA (1191bp) protein (397aa)
D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein 4) {ECO:0000313|EMBL:CDM65374.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CDM65374.1};; EC=3.4.21.- {ECO:0000313|EMBL:CDM65374.1};; TaxID=454194 s
D-alanyl-D-alanine carboxypeptidase (EC:3.4.99.-)
D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein 4) n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDW2_CHLTF
13_1_20cm_2_scaffold_2035_13
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

11296..12189
DNA (894bp) protein (298aa)
L-proline dehydrogenase n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6Z2C7_MELRP
L-proline dehydrogenase {ECO:0000313|EMBL:AFN73305.1}; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter r
L-proline dehydrogenase
13_1_20cm_2_scaffold_2035_14

Not on your lists

12186..13100
DNA (915bp) protein (305aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_0181
RNAse Z (EC:3.1.26.11)
Ribonuclease Z n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W3F1_9CYAN
13_1_20cm_2_scaffold_2035_15
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(13097..13651)
DNA (555bp) protein (185aa)
putative thiosulfate sulfurtransferase GlpE (EC:2.8.1.1)
Rhodanese domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEV2_9BACT
glutaredoxin Tax=CSP1_2_Dadabacteria
13_1_20cm_2_scaffold_2035_16
CG_Elusi_04, Elusimicrobia, Bacteria

Not on your lists

comp(13683..15140)
DNA (1458bp) protein (486aa)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9TK20_CALOO
MiaB family RNA modification protein; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA Tax=CG_Elusi_04
tRNA-i(6)A37 thiotransferase protein MiaB
13_1_20cm_2_scaffold_2035_17
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15286..15567
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XVX3_SORCE
Uncharacterized protein {ECO:0000313|EMBL:AGP34758.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
hypothetical protein
13_1_20cm_2_scaffold_2035_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(15524..16714)
DNA (1191bp) protein (397aa)
Zn-dependent hydrolase-like glyoxylase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJE0_CHLTF
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:CDM66567.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Zn-dependent hydrolase-like glyoxylase
13_1_20cm_2_scaffold_2035_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

16889..18907
DNA (2019bp) protein (673aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01R31_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_20cm_2_scaffold_2035_trna_1
unknown

Not on your lists

18978..19049
DNA (72bp)
transferRNA
13_1_20cm_2_scaffold_2035_20
unknown

Not on your lists

comp(19357..20028)
DNA (672bp) protein (224aa)

This feature has no annotations

13_1_20cm_2_scaffold_2035_21
unknown

Not on your lists

comp(20191..20502)
DNA (312bp) protein (104aa)

This feature has no annotations

13_1_20cm_2_scaffold_2035_22
unknown

Not on your lists

comp(20537..21223)
DNA (687bp) protein (229aa)

This feature has no annotations

13_1_20cm_2_scaffold_2035_23
unknown

Not on your lists

comp(21282..21620)
DNA (339bp) protein (113aa)

This feature has no annotations

13_1_20cm_2_scaffold_2035_24
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(21633..21845)
DNA (213bp) protein (71aa)
Peptidase M28 n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LMN3_SYNFM
peptidase M28 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
peptidase M28
13_1_20cm_2_scaffold_2035_25
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(21845..22642)
DNA (798bp) protein (266aa)
Peptidase M28 n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LMN3_SYNFM
peptidase M28 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
peptidase M28
13_1_20cm_2_scaffold_2035_26
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(22991..23701)
DNA (711bp) protein (237aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
13_1_20cm_2_scaffold_2035_27
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

23819..24790
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036304ED
GntR family transcriptional regulator; K07978 GntR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
GntR family transcriptional regulator
13_1_20cm_2_scaffold_2035_28
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

24846..25136
DNA (291bp) protein (97aa)
DNA polymerase beta domain protein region n=1 Tax=Arthrospira maxima CS-328 RepID=B5W533_ARTMA
DNA polymerase beta domain-containing protein region; K07075 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
DNA polymerase beta domain-containing protein region
13_1_20cm_2_scaffold_2035_29
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25133..25318
DNA (186bp) protein (62aa)
nucleotidyltransferase n=1 Tax=Thermus islandicus RepID=UPI0003B5783A
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
hypothetical protein
Displaying items 1-30 of 35 in total

View Taxonomy