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13_1_20cm_2_scaffold_3943

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_3943_1

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1..474
DNA (474bp) protein (158aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021G1_SOLUE
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AIA10580.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ECF subfamily RNA polymerase sigma-24 factor
13_1_20cm_2_scaffold_3943_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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561..3335
DNA (2775bp) protein (925aa)
Tetratricopeptide TPR_4 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021G2_SOLUE
Tetratricopeptide TPR_4 {ECO:0000313|EMBL:ABJ84427.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
hypothetical protein
13_1_20cm_2_scaffold_3943_3
unknown

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3524..4138
DNA (615bp) protein (205aa)

This feature has no annotations

13_1_20cm_2_scaffold_3943_4
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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4223..5392
DNA (1170bp) protein (390aa)
Fervidolysin. Serine peptidase. MEROPS family S08A n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021G4_SOLUE
Fervidolysin. Serine peptidase. MEROPS family S08A {ECO:0000313|EMBL:ABJ84425.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candi
fervidolysin
13_1_20cm_2_scaffold_3943_5
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5482..6219
DNA (738bp) protein (246aa)
PAS domain S-box n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPU9_SINAD
Two-component hybrid sensor and regulator {ECO:0000313|EMBL:KFC68501.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Mas
PAS domain-containing protein
13_1_20cm_2_scaffold_3943_6
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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6344..7714
DNA (1371bp) protein (457aa)
40-residue YVTN family beta-propeller repeat protein n=1 Tax=Pseudomonas sp. K-62 RepID=I2FFY7_9PSED
YVTN beta-propeller repeat-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
YVTN beta-propeller repeat-containing protein
13_1_20cm_2_scaffold_3943_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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7820..9013
DNA (1194bp) protein (398aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VQ2_SOLUE
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ABJ86263.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus S
RND family efflux transporter MFP subunit
13_1_20cm_2_scaffold_3943_8
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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9010..12126
DNA (3117bp) protein (1039aa)
Acriflavin resistance protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VQ0_SOLUE
Acriflavin resistance protein {ECO:0000313|EMBL:ABJ86265.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" s
acriflavin resistance protein
13_1_20cm_2_scaffold_3943_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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12348..14129
DNA (1782bp) protein (594aa)
Type II secretion system protein E n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRV6_KORVE
Type IV-A pilus assembly ATPase PilB {ECO:0000313|EMBL:CDM65588.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;
type II secretion system protein E
13_1_20cm_2_scaffold_3943_10
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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14194..14793
DNA (600bp) protein (200aa)
nitrile hydratase subunit alpha (EC:4.2.1.84); K01721 nitrile hydratase [EC:4.2.1.84] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
Cobalt-containing nitrile hydratase subunit alpha n=2 Tax=Klebsiella RepID=I6W5Y0_KLEOX
nitrile hydratase
13_1_20cm_2_scaffold_3943_11
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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14790..15449
DNA (660bp) protein (220aa)
nitrile hydratase (EC:4.2.1.84); K01721 nitrile hydratase [EC:4.2.1.84] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
nthB; nitrile hydratase beta subunit (EC:4.2.1.84)
Cobalt-containing nitrile hydratase subunit beta n=1 Tax=Pantoea sp. AS-PWVM4 RepID=U2L4Z1_9ENTR
13_1_20cm_2_scaffold_3943_12
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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15487..15789
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S9E8_9BURK
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
putative metal chaperone, involved in Fe-nitrile hydratase activation, GTPase of COG0523 family
13_1_20cm_2_scaffold_3943_13
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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15779..17053
DNA (1275bp) protein (425aa)
Peroxiredoxin n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KXG6_SOLCM
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
peroxiredoxin
13_1_20cm_2_scaffold_3943_14
unknown

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comp(17187..17399)
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_20cm_2_scaffold_3943_15
unknown

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comp(17429..18028)
DNA (600bp) protein (200aa)

This feature has no annotations

13_1_20cm_2_scaffold_3943_16

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comp(18222..18749)
DNA (528bp) protein (176aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WV62_9BURK
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AIA10580.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_1_20cm_2_scaffold_3943_17
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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18790..20652
DNA (1863bp) protein (621aa)
ABC transporter related n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CW5_SOLUE
ABC transporter related {ECO:0000313|EMBL:ABJ81101.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
ABC transporter-like protein
13_1_20cm_2_scaffold_3943_18
unknown

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20832..21248
DNA (417bp) protein (139aa)

This feature has no annotations

Displaying 18 items

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