ggKbase home page

13_1_20cm_2_scaffold_462

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_462_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

2..1204
-----------------
DNA (1203bp)
protein (401aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_20cm_2_scaffold_462_2
unknown

Not on your lists

1230..1523
-----------------
DNA (294bp)
protein (98aa)

This feature has no annotations

13_1_20cm_2_scaffold_462_3
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

1513..1794
-----------------
DNA (282bp)
protein (94aa)
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_5
gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=GATC_THEYD
13_1_20cm_2_scaffold_462_4
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

1791..3233
-----------------
DNA (1443bp)
protein (481aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_Acidobacteri
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
glutamyl-tRNA(Gln) amidotransferase n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000361E3E8
13_1_20cm_2_scaffold_462_5
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

3264..3929
-----------------
DNA (666bp)
protein (222aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SH7_SOLUE
outer membrane chaperone Skp; K06142 outer membrane protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
outer membrane chaperone Skp
13_1_20cm_2_scaffold_462_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3932..4228)
-----------------
DNA (297bp)
protein (99aa)
id=12554195 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_20cm_2_scaffold_462_7
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4232..5686)
-----------------
DNA (1455bp)
protein (485aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.-
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Smithella sp. ME-1 RepID=V4FHB2_9DELT rbh
13_1_20cm_2_scaffold_462_8
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(5700..7097)
-----------------
DNA (1398bp)
protein (466aa)
Cobyrinic acid A,C-diamide synthase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NS98_GRAMM
Cobyrinic acid A,C-diamide synthase {ECO:0000256|HAMAP-Rule:MF_00027}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensi
cobyrinic acid A,C-diamide synthase
13_1_20cm_2_scaffold_462_9
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

7117..8160
-----------------
DNA (1044bp)
protein (348aa)
Methylthioribose-1-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000255|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000255|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:00
Methylthioribose-1-phosphate isomerase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=MTNA_KORVE
translation initiation factor 2B subunit I
13_1_20cm_2_scaffold_462_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


8160..9221
-----------------
DNA (1062bp)
protein (354aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-th
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=TSAD_KORVE
DNA-binding/iron metalloprotein/AP endonuclease
13_1_20cm_2_scaffold_462_11
unknown

Not on your lists

9391..9705
-----------------
DNA (315bp)
protein (105aa)

This feature has no annotations

13_1_20cm_2_scaffold_462_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(9778..10338)
-----------------
DNA (561bp)
protein (187aa)
Ribosome-recycling factor n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV34_KORVE
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=454194 species="Bacteria;
ribosome recycling factor
13_1_20cm_2_scaffold_462_13
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10367..11077)
-----------------
DNA (711bp)
protein (237aa)
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=RBG_13_Deltaproteobacteria_47_9_curated
Uridylate kinase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K327_DESAC
pyrH; uridylate kinase
13_1_20cm_2_scaffold_462_14
GWC2_Deltaproteobacteria_42_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11223..11873)
-----------------
DNA (651bp)
protein (217aa)
Elongation factor Ts n=2 Tax=Geobacter sulfurreducens RepID=EFTS_GEOSL
tsf; elongation factor Ts; K02357 elongation factor Ts Tax=GWC2_Deltaproteobacteria_42_11_curated
tsf; translation elongation factor Ts
13_1_20cm_2_scaffold_462_15
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists


comp(11980..12798)
-----------------
DNA (819bp)
protein (273aa)
30S ribosomal protein S2 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=RS2_KORVE
30S ribosomal protein S2 {ECO:0000255|HAMAP-Rule:MF_00291}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (
rpsB; 30S ribosomal protein S2
13_1_20cm_2_scaffold_462_16
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists


comp(12941..13279)
-----------------
DNA (339bp)
protein (113aa)
30S ribosomal protein S9 n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGN9_CHLTF
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Ch
30S ribosomal protein S9
13_1_20cm_2_scaffold_462_17
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


comp(13330..13806)
-----------------
DNA (477bp)
protein (159aa)
50S ribosomal protein L13 n=1 Tax=Thermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10) RepID=D2C3Y8_THENR
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
50S ribosomal protein L13
13_1_20cm_2_scaffold_462_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

13828..15189
-----------------
DNA (1362bp)
protein (454aa)
Peptidase A2A n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QTX2_9CAUL
peptidase S1 and S6 chymotrypsin/Hap; K12600 superkiller protein 3 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
13_1_20cm_2_scaffold_462_19
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(15301..16008)
-----------------
DNA (708bp)
protein (236aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJW7_KORVE
N-acetyltransferase Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_1_20cm_2_scaffold_462_20
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

16095..16991
-----------------
DNA (897bp)
protein (299aa)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795}; Short=MurNAc-6-P etherase {ECO:0000256|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000256|HAMA
N-acetylmuramic acid 6-phosphate etherase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IND2_KORVE
murQ; N-acetylmuramic acid 6-phosphate etherase
13_1_20cm_2_scaffold_462_21
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

17064..18170
-----------------
DNA (1107bp)
protein (369aa)
N-acetylglucosamine 6-phosphate deacetylase; K01443 N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMW9_KORVE
N-acetylglucosamine 6-phosphate deacetylase
13_1_20cm_2_scaffold_462_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

18158..19414
-----------------
DNA (1257bp)
protein (419aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] Tax=RBG_16_Acidobacteria_70_10_curated
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) n=1 Tax=mine drainage metagenome RepID=E6PZD3_9ZZZZ
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
13_1_20cm_2_scaffold_462_23
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

19711..19944
-----------------
DNA (234bp)
protein (78aa)
bcpA; carboxyvinyl-carboxyphosphonate phosphorylmutase (EC:2.7.8.23); K01003 carboxyvinyl-carboxyphosphonate phosphorylmutase [EC:2.7.8.23] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
isocitrate lyase-family protein, Putative carboxyvinyl-carboxyphosphonate phosphorylmutase (EC:2.7.8.23 4.1.3.-)
Displaying 23 items

View Taxonomy