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This organism can only be binned in the context of its binning project SCN18_25_1_16_R3_B. Please contact the project owner (rohansach@berkeley.edu) to become a member and gain access.

13_1_20cm_2_scaffold_712

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_712_1
GWC2_Deltaproteobacteria_42_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..374)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Bacteria RepID=UPI00037BE4B4
phosphoglucomutase/phosphomannomutase alpha/beta/subunit Tax=GWC2_Deltaproteobacteria_42_11_curated
phosphomannomutase
13_1_20cm_2_scaffold_712_2
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

512..1108
DNA (597bp) protein (199aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=RIFCSPLOWO2_02_FULL_Acidobac
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
hypothetical protein n=1 Tax=Saccharibacillus kuerlensis RepID=UPI000377AC64
13_1_20cm_2_scaffold_712_3
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1077..1778
DNA (702bp) protein (234aa)
Putative uncharacterized protein n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QVA4_ACEAZ
hypothetical protein Tax=RifOxyA12_full_Proteobacteria_58_15_curated
hypothetical protein
13_1_20cm_2_scaffold_712_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

1818..2423
DNA (606bp) protein (202aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9H3_GEOUR
1-acyl-sn-glycerol-3-phosphate acyltransferase Tax=CSP1_6_Rokubacteria
phospholipid/glycerol acyltransferase
13_1_20cm_2_scaffold_712_5
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

2420..3664
DNA (1245bp) protein (415aa)
CinA-like protein n=1 Tax=Frankia sp. QA3 RepID=I8QU76_9ACTO
competence/damage-inducible protein cinA; K03742 competence/damage-inducible protein CinA Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
competence-inducible (CinA-like) protein
13_1_20cm_2_scaffold_712_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

3681..4274
DNA (594bp) protein (198aa)
2'-5' RNA ligase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ADI8_THEID
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
2'-5' RNA ligase
13_1_20cm_2_scaffold_712_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

4280..4879
DNA (600bp) protein (200aa)
acyl-phosphate glycerol-3-phosphate acyltransferase; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Glycerol-3-phosphate acyltransferase n=1 Tax=Synechococcus sp. RS9917 RepID=A3Z660_9SYNE
hypothetical protein
13_1_20cm_2_scaffold_712_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

4972..5922
DNA (951bp) protein (317aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394, ECO:0000256|RuleBase:RU000439};; NAD(P)H-dependent glycerol-3-phosphate de
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CL34_DESK7
Glycerol-3-phosphate dehydrogenase (NAD(P)+)
13_1_20cm_2_scaffold_712_9
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5919..6689
DNA (771bp) protein (257aa)
PHP C-terminal domain protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LJR0_SYNFM
phosphotransferase domain-containing protein
Tax=BJP_IG2069_Desfulfarculales_53_13
13_1_20cm_2_scaffold_712_10
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

6755..7447
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MH76_9BACT
TPR repeat-containing protein Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
hypothetical protein
13_1_20cm_2_scaffold_712_11
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

7444..8388
DNA (945bp) protein (315aa)
cell division protein FtsY n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000371D203
ftsY; cell division protein FtsY; K03110 fused signal recognition particle receptor Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
cell division protein FtsY
13_1_20cm_2_scaffold_712_12
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

8523..9578
DNA (1056bp) protein (352aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] T
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CJK7_DESK7
13_1_20cm_2_scaffold_712_13
RBG_13_Deltaproteobacteria_58_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9585..10253
DNA (669bp) protein (223aa)
riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=RBG_13_Deltaproteobacteria_58_19_curated
riboflavin synthase subunit alpha (EC:2.5.1.9)
riboflavin synthase subunit alpha n=1 Tax=Thioalkalivibrio RepID=UPI00037DA7B4
13_1_20cm_2_scaffold_712_14
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

10250..11482
DNA (1233bp) protein (411aa)
riboflavin biosynthesis protein RibA (EC:3.5.4.25); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_cur
riboflavin biosynthesis GTP cyclohydrolase II RibA (EC:3.5.4.25)
Riboflavin biosynthesis protein RibBA n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YHZ1_THEYD
13_1_20cm_2_scaffold_712_15
Desulfurivibrio alkaliphilus, Desulfurivibrio, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11507..12847
DNA (1341bp) protein (447aa)
Signal recognition particle protein n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z2U7_DESAT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=589865 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulf
signal recognition particle protein
13_1_20cm_2_scaffold_712_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


12900..13148
DNA (249bp) protein (83aa)
30S ribosomal protein S16 n=2 Tax=Sulfobacillus acidophilus RepID=F8I2I8_SULAT
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
30S ribosomal protein S16
13_1_20cm_2_scaffold_712_17
Thermovibrio ammonificans, Thermovibrio, Desulfurobacteriales, Aquificae, Aquificae, Bacteria

Not on your lists

13174..13419
DNA (246bp) protein (82aa)
UPF0109 protein Theam_1299 n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T3D0_THEA1
UPF0109 protein Theam_1299 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=648996 species="Bacteria; Aquificae; Desulfurobacteriales; Desulfurobacteriaceae; Thermovibrio.;" source="Thermovibrio ammonificans
hypothetical protein
13_1_20cm_2_scaffold_712_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

13403..13984
DNA (582bp) protein (194aa)
Ribosome maturation factor RimM n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SIU5_9BACT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyr
16S rRNA processing protein RimM
13_1_20cm_2_scaffold_712_19

Not on your lists

13974..14693
DNA (720bp) protein (240aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.228)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SIU4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKN22011.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_20cm_2_scaffold_712_20
Thermodesulfovibrio yellowstonii, Thermodesulfovibrio, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


14723..15070
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=RL19_THEYD
50S ribosomal protein L19 {ECO:0000255|HAMAP-Rule:MF_00402}; TaxID=289376 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio.;" source="Thermodesulfovibrio yellowstonii
rplS; 50S ribosomal protein L19
13_1_20cm_2_scaffold_712_21
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15141..15734
DNA (594bp) protein (198aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SA
Ribonuclease HII n=1 Tax=Desulfovibrio africanus PCS RepID=M5PQ93_DESAF
Ribonuclease H
13_1_20cm_2_scaffold_712_22
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

15734..18853
DNA (3120bp) protein (1040aa)
TPR domain-containing protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CPJ9_MYXFH
hypothetical protein Tax=GWC2_Nitrospirae_57_13_curated
hypothetical protein
13_1_20cm_2_scaffold_712_23
uncultured Chloroflexi bacterium, Chloroflexi, Bacteria

Not on your lists

18924..19814
DNA (891bp) protein (297aa)
Nicotinic acid phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SMW7_9CHLR
Nicotinate phosphoribosyltransferase {ECO:0000313|EMBL:BAL57503.1}; TaxID=166587 species="Bacteria; Chloroflexi; environmental samples.;" source="uncultured Chloroflexi bacterium.;"
Displaying 23 items

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