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13_1_20cm_2_scaffold_19729

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_19729_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(2..148)
-----------------
DNA (147bp)
protein (49aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAF6_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_20cm_2_scaffold_19729_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(166..552)
-----------------
DNA (387bp)
protein (129aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAF7_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_20cm_2_scaffold_19729_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(690..1946)
-----------------
DNA (1257bp)
protein (419aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.3); K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
gdhA; glutamate dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAF8_9BACT
13_1_20cm_2_scaffold_19729_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1943..2686)
-----------------
DNA (744bp)
protein (248aa)
lipB; lipoyltransferase (EC:2.3.1.-); K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
lipB; lipoyltransferase (EC:2.3.1.-)
Octanoyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAF9_9BACT
13_1_20cm_2_scaffold_19729_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(2902..3543)
-----------------
DNA (642bp)
protein (214aa)
trypsin-like serine peptidase, S1C (EC:3.4.21.-) Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
trypsin-like serine peptidase, S1C (EC:3.4.21.-)
Trypsin-like serine peptidase, S1C n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAG0_9BACT
13_1_20cm_2_scaffold_19729_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(4070..5326)
-----------------
DNA (1257bp)
protein (419aa)
RNA polymerase sigma factor n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAG1_9BACT rbh
rpoD; RNA polymerase sigma-70 factor; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpoD; RNA polymerase sigma-70 factor
13_1_20cm_2_scaffold_19729_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(5562..6311)
-----------------
DNA (750bp)
protein (250aa)
Uncharacterized protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YMZ2_9BACT
membrane protease subunit, stomatin/prohibitin Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
membrane protease subunit, stomatin/prohibitin
13_1_20cm_2_scaffold_19729_8
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(6333..7595)
-----------------
DNA (1263bp)
protein (421aa)
Membrane-bound serine protease n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YJM0_THEYD
membrane-bound serine protease; K07403 membrane-bound serine protease (ClpP class) Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
membrane-bound serine protease
13_1_20cm_2_scaffold_19729_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

7744..8631
-----------------
DNA (888bp)
protein (296aa)
trmI; tRNA (adenine-N(1)-)-methyltransferase (EC:2.1.1.36); K07442 tRNA (adenine57-N1/adenine58-N1)-methyltransferase [EC:2.1.1.219 2.1.1.220] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
trmI; tRNA (adenine-N(1)-)-methyltransferase (EC:2.1.1.36)
tRNA (Adenine-N(1)-)-methyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAG2_9BACT rbh
13_1_20cm_2_scaffold_19729_10
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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8628..9491
-----------------
DNA (864bp)
protein (288aa)
Short-chain dehydrogenase {ECO:0000313|EMBL:CBK40222.1}; EC=1.1.1.- {ECO:0000313|EMBL:CBK40222.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Ca
Uncharacterized protein n=1 Tax=Mycobacterium chubuense (strain NBB4) RepID=I4BS69_MYCCN
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
13_1_20cm_2_scaffold_19729_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

9505..9840
-----------------
DNA (336bp)
protein (112aa)
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
13_1_20cm_2_scaffold_19729_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

9861..10724
-----------------
DNA (864bp)
protein (288aa)
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAG4_9BACT rbh
13_1_20cm_2_scaffold_19729_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

10721..11239
-----------------
DNA (519bp)
protein (173aa)
aroK; shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAG5_9BACT
13_1_20cm_2_scaffold_19729_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

11463..11762
-----------------
DNA (300bp)
protein (100aa)
Putative RNA-binding protein RbpA n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIC8_9BACT
Putative RNA-binding protein RbpA {ECO:0000313|EMBL:CBK43015.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
putative RNA-binding protein RbpA
13_1_20cm_2_scaffold_19729_trna_1
unknown

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11913..11986
-----------------
DNA (74bp)
transferRNA
Displaying 15 items

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