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13_1_40cm_3_scaffold_3342

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_3342_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1..357)
DNA (357bp) protein (119aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA ligase D n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00036B8880
DNA ligase D
13_1_40cm_3_scaffold_3342_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

644..1162
DNA (519bp) protein (173aa)
Probable DNA repair protein Anae109_0938 n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H8V1_ANADF
Ku family containing protein; K10979 DNA end-binding protein Ku Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA repair protein
13_1_40cm_3_scaffold_3342_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1159..1860)
DNA (702bp) protein (234aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=4930082 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_3342_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1971..2741
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA91_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_3342_5
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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2854..3381
DNA (528bp) protein (176aa)
Glycosylase; K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] Tax=RBG_13_Ignavibacteria_36_8_curated
DNA-3-methyladenine glycosylase I (EC:3.2.2.20); K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] id=14431486 bin=bin3_NC10 species=Desulfovibrio salexigens genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
DNA-3-methyladenine glycosylase I (EC:3.2.2.20)
13_1_40cm_3_scaffold_3342_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3417..3938)
DNA (522bp) protein (174aa)
Elongation factor P n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=EFP_GEMAT
efp; elongation factor P; K02356 elongation factor P Tax=RBG_16_Gemmatimonadetes_66_8_curated
Elongation factor P
13_1_40cm_3_scaffold_3342_7
unknown

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4169..4882
DNA (714bp) protein (238aa)

This feature has no annotations

13_1_40cm_3_scaffold_3342_8
Halobacteroides halobius, Halobacteroides, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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comp(4914..5870)
DNA (957bp) protein (319aa)
Tfp pilus assembly protein PilF n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K8K8_HALHC
Tfp pilus assembly protein PilF
Tfp pilus assembly protein PilF {ECO:0000313|EMBL:AGB40699.1}; Flags: Precursor;; TaxID=748449 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Halobacteroides.;" source
13_1_40cm_3_scaffold_3342_9
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6013..7380)
DNA (1368bp) protein (456aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=2778835 bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
two component sigma-54 specific Fis family transcriptional regulator Tax=GWC2_Geobacteraceae_55_20_curated
sigma-54-dependent transcriptional response regulator
13_1_40cm_3_scaffold_3342_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(7493..8962)
DNA (1470bp) protein (490aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; C
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQW6_KORVE
sensor signal transduction histidine kinase
13_1_40cm_3_scaffold_3342_11
unknown

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comp(8959..9846)
DNA (888bp) protein (296aa)

This feature has no annotations

13_1_40cm_3_scaffold_3342_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

10222..11145
DNA (924bp) protein (308aa)
L-proline dehydrogenase (EC:1.5.99.8); K00318 proline dehydrogenase [EC:1.5.99.8] Tax=GWC2_Gemmatimonadetes_71_10_curated
Proline dehydrogenase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SV36_9BACT id=5223515 bin=16ft_combo_ws3_JS1 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
proline dehydrogenase
13_1_40cm_3_scaffold_3342_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

11155..13053
DNA (1899bp) protein (633aa)
2-oxoglutarate ferredoxin oxidoreductase alpha subunit n=1 Tax=uncultured bacterium W5-51b RepID=H9BX69_9BACT
pyruvate flavodoxin/ferredoxin oxidoreductase-like protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
13_1_40cm_3_scaffold_3342_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

13050..14054
DNA (1005bp) protein (335aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
2-oxoglutarate ferredoxin oxidoreductase beta subunit n=1 Tax=uncultured bacterium W5-51b RepID=H9BX70_9BACT
2-oxoglutarate ferredoxin oxidoreductase subunit beta
13_1_40cm_3_scaffold_3342_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

14051..14299
DNA (249bp) protein (83aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_3342_16
Bacillus subterraneus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14433..15821
DNA (1389bp) protein (463aa)
SprB n=2 Tax=Bacillus sp. RepID=Q45464_BACSP
Peptidase S8 {ECO:0000313|EMBL:KIY21241.1}; TaxID=285983 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus subterraneus.;"
aprX; Serine protease AprX
13_1_40cm_3_scaffold_3342_17
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

15985..16608
DNA (624bp) protein (208aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01Y47_SOLUE
HAD family hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:ABJ85418.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;"
13_1_40cm_3_scaffold_3342_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16688..19165)
DNA (2478bp) protein (826aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A719_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG88939.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_3342_19
unknown

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19362..19619
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_3_scaffold_3342_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(19648..20700)
DNA (1053bp) protein (351aa)
methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase Tax=RBG_16_Acidobacteria_70_10_curated
methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase id=14425745 bin=bin1_lowGC species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
methionine-R-sulfoxide reductase
13_1_40cm_3_scaffold_3342_21
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

20813..21496
DNA (684bp) protein (228aa)
DNA-binding response regulator in two-component system with YedV n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EEX8_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KGM43243.1}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
13_1_40cm_3_scaffold_3342_22
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

21489..22895
DNA (1407bp) protein (469aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=264732 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae;
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RIF2_MOOTA
sensor signal transduction histidine kinase
13_1_40cm_3_scaffold_3342_23
delta proteobacterium NaphS2, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22984..23973)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F9S1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EFK07512.1}; TaxID=88274 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium NaphS2.;"
putative 3-carboxymuconate cyclase
13_1_40cm_3_scaffold_3342_24
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24177..25466)
DNA (1290bp) protein (430aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; My
Putative sensory box histidine kinase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MWQ2_CORCM
ntrY; putative sensory box histidine kinase
13_1_40cm_3_scaffold_3342_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25456..26424)
DNA (969bp) protein (323aa)
Two-component system response regulator n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F1W1_ACIC5
sigma-54 dependent DNA-binding response regulator Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
sigma-54 factor interaction domain-containing protein
Displaying 25 items

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