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13_1_40cm_3_scaffold_3448

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_3448_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(1..504)
-----------------
DNA (504bp)
protein (168aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_3448_2
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(540..1082)
-----------------
DNA (543bp)
protein (181aa)
pgsA2; CDP-alcohol phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003650ABC
pgsA2; CDP-alcohol phosphatidyltransferase
13_1_40cm_3_scaffold_3448_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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1098..1556
-----------------
DNA (459bp)
protein (153aa)
Cyclic nucleotide-binding domain-containing protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MHI7_CORCM
cyclic nucleotide-binding domain-containing protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
cyclic nucleotide-binding domain-containing protein
13_1_40cm_3_scaffold_3448_4
unknown

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1567..1926
-----------------
DNA (360bp)
protein (120aa)

This feature has no annotations

13_1_40cm_3_scaffold_3448_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(1923..3056)
-----------------
DNA (1134bp)
protein (378aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA53_GEMAT rbh
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Tetratricopeptide TPR_1 repeat-containing protein
13_1_40cm_3_scaffold_3448_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

3105..4508
-----------------
DNA (1404bp)
protein (468aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_
rca:Rcas_3355 arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] id=1246557 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1)
13_1_40cm_3_scaffold_3448_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4533..5186)
-----------------
DNA (654bp)
protein (218aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG92076.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_3448_8
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5183..5818)
-----------------
DNA (636bp)
protein (212aa)
Glycoside hydrolase family 13 domain protein n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LU03_DESBD
glycoside hydrolase family 13
Glycoside hydrolase family 13 domain protein {ECO:0000313|EMBL:ACU89626.1}; Flags: Precursor;; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiac
13_1_40cm_3_scaffold_3448_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(5815..6360)
-----------------
DNA (546bp)
protein (182aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5K6_GEMAT
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AHG92078.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_3448_10
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(6389..7915)
-----------------
DNA (1527bp)
protein (509aa)
Protein containing DUF255 (Fragment) n=1 Tax=mine drainage metagenome RepID=T1BWE8_9ZZZZ
hypothetical protein; K06888 Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_1_40cm_3_scaffold_3448_11
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7965..8192
-----------------
DNA (228bp)
protein (76aa)
Iron sulphur-containing domain, CDGSH-type n=2 Tax=Micromonospora RepID=D9TA87_MICAI
CDGSH-type iron sulfur domain-containing protein
Iron sulphur-containing domain, CDGSH-type {ECO:0000313|EMBL:ADL46400.1}; TaxID=644283 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospor
13_1_40cm_3_scaffold_3448_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

8268..8411
-----------------
DNA (144bp)
protein (48aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_3_scaffold_3448_13
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(8404..8937)
-----------------
DNA (534bp)
protein (178aa)
lipoprotein Tax=RBG_16_Chloroflexi_64_32_curated
13_1_40cm_3_scaffold_3448_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8934..10565)
-----------------
DNA (1632bp)
protein (544aa)
NAD-dependent aldehyde dehydrogenase; K00294 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.1.12] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H8Q0_ANADF
delta-1-pyrroline-5-carboxylate dehydrogenase
13_1_40cm_3_scaffold_3448_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

10610..11080
-----------------
DNA (471bp)
protein (157aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHE4_9BACT
glyoxalase/bleomycin resistance protein/dioxygenase; K07104 Tax=RBG_16_Gemmatimonadetes_66_8_curated
glyoxalase
13_1_40cm_3_scaffold_3448_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(11077..12111)
-----------------
DNA (1035bp)
protein (345aa)
PAS/PAC sensor signal transduction histidine kinase Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_3448_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12169..12870
-----------------
DNA (702bp)
protein (234aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_3_scaffold_3448_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12871..14763
-----------------
DNA (1893bp)
protein (631aa)
glucosamine-6-phosphate deaminase-like protein; K02564 glucosamine-6-phosphate deaminase [EC:3.5.99.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative glucosamine-6-phosphate isomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A967_GEMAT
glucosamine-6-phosphate isomerase
13_1_40cm_3_scaffold_3448_19
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14842..15330
-----------------
DNA (489bp)
protein (163aa)
Tax=BJP_S1_SUB10_Methylophilales_55_32
13_1_40cm_3_scaffold_3448_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15579..17189
-----------------
DNA (1611bp)
protein (537aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B7_GEMAT
ATP-binding region ATPase domain protein
13_1_40cm_3_scaffold_3448_21
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

17204..17908
-----------------
DNA (705bp)
protein (235aa)
OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B6_GEMAT
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:AHG87878.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_3448_22
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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17905..18723
-----------------
DNA (819bp)
protein (273aa)
PEP phosphonomutase-like protein id=14626847 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Uncharacterized protein {ECO:0000313|EMBL:ETW99528.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
13_1_40cm_3_scaffold_3448_23
unknown

Not on your lists

comp(18720..19475)
-----------------
DNA (756bp)
protein (252aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI0003762967
13_1_40cm_3_scaffold_3448_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19571..19978
-----------------
DNA (408bp)
protein (136aa)
acT domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
acT domain-containing protein id=14429420 bin=bin3_NC10 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin3_NC10 organism_group=NC10
ACT domain-containing protein
13_1_40cm_3_scaffold_3448_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

20018..20281
-----------------
DNA (264bp)
protein (88aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_3_scaffold_3448_26
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(20278..20694)
-----------------
DNA (417bp)
protein (139aa)
Putative uncharacterized protein n=2 Tax=Chloroflexus RepID=A9WJV9_CHLAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY36575.1}; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus
13_1_40cm_3_scaffold_3448_27
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20687..21295)
-----------------
DNA (609bp)
protein (203aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZGF0_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig162, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51939.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
hypothetical protein
13_1_40cm_3_scaffold_3448_28
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(21282..23306)
-----------------
DNA (2025bp)
protein (675aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RBG_16_Acidobacteria_70_10_curated
DNA ligase D n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H8V2_ANADF
DNA ligase D
13_1_40cm_3_scaffold_3448_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(23326..23787)
-----------------
DNA (462bp)
protein (154aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ATP-dependent DNA ligase n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CGX3_AGRT5
DNA ligase D
13_1_40cm_3_scaffold_3448_30
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(23799..24920)
-----------------
DNA (1122bp)
protein (374aa)
Rhomboid-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQG8_KORVE
rhomboid-like protein
Rhomboid-like protein {ECO:0000313|EMBL:ABF40882.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain
Displaying 30 items

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