ggKbase home page

13_1_40cm_3_scaffold_877

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_877_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..947)
DNA (945bp) protein (315aa)
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_3_scaffold_877_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(949..2076)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB84_GEMAT
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RBG_16_Gemmatimonadetes_66_8_curated
ATPase-like, ParA/MinD
13_1_40cm_3_scaffold_877_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(2073..3104)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB85_GEMAT
hypothetical protein; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
phosphoesterase RecJ domain protein
13_1_40cm_3_scaffold_877_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3191..4780)
DNA (1590bp) protein (530aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000371BB6D rbh
amino acid permease Tax=GWC2_Gemmatimonadetes_71_10_curated
amino acid/polyamine/organocation transporter, APC superfamily
13_1_40cm_3_scaffold_877_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4872..6056)
DNA (1185bp) protein (395aa)
TonB-dependent outer membrane receptor n=1 Tax=Gramella forsetii (strain KT0803) RepID=A0M0T4_GRAFK
TonB-dependent outer membrane protein, SusC/RagA
TonB-dependent outer membrane protein, SusC/RagA {ECO:0000313|EMBL:AHG90170.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_877_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(6029..7300)
DNA (1272bp) protein (424aa)
Putative outer membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8I0_GEMAT
TonB-dependent outer membrane protein, SusC/RagA
TonB-dependent outer membrane protein, SusC/RagA {ECO:0000313|EMBL:AHG89359.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_877_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7308..8765)
DNA (1458bp) protein (486aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB87_GEMAT
13_1_40cm_3_scaffold_877_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8774..9115)
DNA (342bp) protein (114aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=GWC2_Gemmatimonadetes_71_10_curated
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB89_GEMAT
hypothetical protein
13_1_40cm_3_scaffold_877_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9112..10209)
DNA (1098bp) protein (366aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_3_scaffold_877_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10217..11728
DNA (1512bp) protein (504aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB94_GEMAT
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosp
13_1_40cm_3_scaffold_877_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

11728..12453
DNA (726bp) protein (242aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_877_12
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

Not on your lists

12441..13136
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000381E338
ABC transporter permease; K05773 tungstate transport system permease protein Tax=RBG_13_Actinobacteria_35_12_curated
binding-protein-dependent transport systems inner membrane component
13_1_40cm_3_scaffold_877_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

13129..14139
DNA (1011bp) protein (337aa)
ABC transporter; K06857 tungstate transport system ATP-binding protein Tax=GWC2_Gemmatimonadetes_71_10_curated
ABC transporter ATP-binding protein; K06857 tungstate transport system ATP-binding protein id=14430717 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
ABC transporter-like protein
13_1_40cm_3_scaffold_877_14
Chlorobium phaeovibrioides, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

14143..14478
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Prosthecochloris vibrioformis (strain DSM 265) RepID=A4SF36_PROVI
putative 6-pyruvoyl tetrahydropterin synthase
Uncharacterized protein {ECO:0000313|EMBL:ABP37095.1}; TaxID=290318 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Prosthecoch
13_1_40cm_3_scaffold_877_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

14501..15223
DNA (723bp) protein (241aa)
formate dehydrogenase family accessory protein (FdhD) Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative formate dehydrogenase family accessory protein (FdhD) id=3910770 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formate dehydrogenase family accessory protein FdhD
13_1_40cm_3_scaffold_877_16
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15220..15642
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003713DB1
Uncharacterized protein {ECO:0000313|EMBL:KIN90847.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
CoA-binding protein
13_1_40cm_3_scaffold_877_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

15656..16264
DNA (609bp) protein (203aa)
molybdopterin-guanine dinucleotide biosynthesis protein A; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77] Tax=RBG_16_Gemmatimonadetes_66_8_curated
mobA family protein; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77] id=14631117 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
Molybdopterin-guanine dinucleotide biosynthesis protein A
13_1_40cm_3_scaffold_877_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

16246..16779
DNA (534bp) protein (178aa)
Molybdopterin-guanine dinucleotide biosynthesis protein B MobB n=1 Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G3H8_9DELT
Molybdopterin-guanine dinucleotide biosynthesis protein B Tax=GWC2_Gemmatimonadetes_71_10_curated
molybdopterin-guanine dinucleotide biosynthesis protein B
13_1_40cm_3_scaffold_877_19
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

16776..17999
DNA (1224bp) protein (408aa)
molybdenum cofactor synthesis domain-containing protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
MoeA domain protein domain I and II
Molybdopterin molybdochelatase id=4324808 bin=GWF2_Syntrophobacterales_56_9 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_877_20
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17999..18832
DNA (834bp) protein (278aa)
Diguanylate cyclase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GEU7_GEOUR
diguanylate cyclase Tax=RBG_13_Deltaproteobacteria_61_14_curated
diguanylate cyclase
13_1_40cm_3_scaffold_877_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

18834..19652
DNA (819bp) protein (273aa)
peptidase M61 n=1 Tax=Spirosoma spitsbergense RepID=UPI0003707D43
Predicted protease with the C-terminal PDZ domain {ECO:0000313|EMBL:CDM66894.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylal
peptidase M61 domain-containing protein
13_1_40cm_3_scaffold_877_22
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

19649..20554
DNA (906bp) protein (302aa)
Peptidase M61 n=1 Tax=Pedobacter sp. BAL39 RepID=A6EB86_9SPHI
peptidase M61 domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
peptidase M61 domain-containing protein
13_1_40cm_3_scaffold_877_23
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

20551..21177
DNA (627bp) protein (209aa)
Multiple antibiotic resistance MarC-related protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IU42_KORVE
multiple antibiotic resistance MarC-like protein
UPF0056 inner membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatil
13_1_40cm_3_scaffold_877_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21317..22111
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003697360
putative two-component sensor histidine kinase protein
sensor histidine kinase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
13_1_40cm_3_scaffold_877_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22108..22890
DNA (783bp) protein (261aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
Histidine kinase n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B5Q2_9BURK
sensor histidine kinase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
13_1_40cm_3_scaffold_877_26
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

Not on your lists

comp(22894..24513)
DNA (1620bp) protein (540aa)
electron-transferring-flavoprotein dehydrogenase; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] id=1250187 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
electron-transferring-flavoprotein dehydrogenase; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
electron transfer flavoprotein-ubiquinone oxidoreductase
13_1_40cm_3_scaffold_877_27
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(24506..25465)
DNA (960bp) protein (320aa)
Electron transfer flavoprotein, alpha subunit n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LD69_CHLTF id=5223690 bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
etfA; electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit Tax=GWC2_Gemmatimonadetes_71_10_curated
Electron transfer flavoprotein alpha/beta-subunit
13_1_40cm_3_scaffold_877_28
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(25462..26214)
DNA (753bp) protein (251aa)
Electron transfer flavoprotein subunit beta n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AKP2_IGNAJ id=5223689 bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
etfB; electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
etfB; electron transfer flavoprotein subunit beta
13_1_40cm_3_scaffold_877_29
GWA2_Ignavibacteriae_55_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(26232..28001)
DNA (1770bp) protein (590aa)
hypothetical protein Tax=GWA2_Ignavibacteriae_55_25_curated
Putative uncharacterized protein id=4924174 bin=GWA2_Ignavibacteria_55_11 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome rbh
hypothetical protein
13_1_40cm_3_scaffold_877_30
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(28036..29223)
DNA (1188bp) protein (396aa)
gcdH; glutaryl-CoA dehydrogenase (EC:1.3.99.7); K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Glutaryl-CoA dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABA7_GEMAT
acyl-CoA dehydrogenase domain-containing protein
Displaying items 1-30 of 51 in total

View Taxonomy