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13_1_40cm_3_scaffold_919

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_919_1
unknown

Not on your lists

comp(3..290)
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_3_scaffold_919_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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359..1711
DNA (1353bp) protein (451aa)
Peptidase M20 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CS1_SOLUE
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
13_1_40cm_3_scaffold_919_3
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1695..2129)
DNA (435bp) protein (145aa)
S23 ribosomal protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CN49_SIDLE
S23 ribosomal protein
S23 ribosomal protein {ECO:0000313|EMBL:ADE12746.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrop
13_1_40cm_3_scaffold_919_4

Not on your lists

comp(2215..2850)
DNA (636bp) protein (212aa)
Molybdopterin binding protein n=1 Tax=uncultured bacterium F25-01 RepID=I3VIH3_9BACT
Molybdopterin binding protein {ECO:0000313|EMBL:AFK79179.1}; TaxID=1191433 species="Bacteria; environmental samples.;" source="uncultured bacterium F25-01.;"
oxidoreductase molybdopterin binding protein
13_1_40cm_3_scaffold_919_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2863..3564)
DNA (702bp) protein (234aa)
lipB; lipoyltransferase (EC:2.3.1.181); K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181] Tax=GWC2_Gemmatimonadetes_71_10_curated
lipB; lipoate biosynthesis protein B; Lipoate-protein ligase B (EC:2.3.1.-)
Octanoyltransferase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFX3_9BACT
13_1_40cm_3_scaffold_919_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3561..3884)
DNA (324bp) protein (108aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_3_scaffold_919_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3980..5371)
DNA (1392bp) protein (464aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Dihydrolipoyl dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6C7_GEMAT
dihydrolipoamide dehydrogenase
13_1_40cm_3_scaffold_919_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5466..6764)
DNA (1299bp) protein (433aa)
pdhC; pyruvate dehydrogenase E2 component (EC:2.3.1.12); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_cur
pdhC; pyruvate dehydrogenase E2 component (EC:2.3.1.12)
Pyruvate dehydrogenase E2 component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D0_GEMAT
13_1_40cm_3_scaffold_919_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6795..7775)
DNA (981bp) protein (327aa)
pdhB; pyruvate dehydrogenase E1 component beta subunit (EC:1.2.4.1); K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Pyruvate dehydrogenase E1 component beta subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D1_GEMAT
Transketolase central region
13_1_40cm_3_scaffold_919_10
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7775..8581)
DNA (807bp) protein (269aa)
pdhA; pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
pdhA; pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component alpha subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D2_GEMAT
13_1_40cm_3_scaffold_919_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9679..10680)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7G4_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_3_scaffold_919_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(10682..11254)
DNA (573bp) protein (191aa)
glycine oxidase ThiO Tax=GWC2_Gemmatimonadetes_71_10_curated
glycine oxidase ThiO id=14430631 bin=bin3_NC10 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
glycine oxidase ThiO
13_1_40cm_3_scaffold_919_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(11196..11741)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YBV1_SORCE
glycine oxidase ThiO Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_3_scaffold_919_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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11785..12003
DNA (219bp) protein (73aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_919_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(12000..12965)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6D2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90209.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_919_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13062..14417)
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D5_GEMAT
glycosyl transferase family 2
Glycosyl transferase family 2 {ECO:0000313|EMBL:AHG90211.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_919_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(14429..15460)
DNA (1032bp) protein (344aa)
glycosyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
group 1 glycosyl transferase id=12556756 bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
group 1 glycosyl transferase
13_1_40cm_3_scaffold_919_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15521..17515)
DNA (1995bp) protein (665aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3); K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
Multi-sensor hybrid histidine kinase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AXH1_HERA2
multi-sensor hybrid histidine kinase
13_1_40cm_3_scaffold_919_19
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(17512..17955)
DNA (444bp) protein (148aa)
Fis family transcriptional regulator n=1 Tax=Calescamantes bacterium SCGC AAA471-M6 RepID=UPI0003B5B0E0
hypothetical protein Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Fis family transcriptional regulator
13_1_40cm_3_scaffold_919_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17952..18644)
DNA (693bp) protein (231aa)
Peptidase C26 id=2304934 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Predicted glutamine amidotransferases Tax=GWA2_Rokubacteria_73_35_curated
Predicted glutamine amidotransferases
13_1_40cm_3_scaffold_919_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18641..19150)
DNA (510bp) protein (170aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_919_22
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(19169..21379)
DNA (2211bp) protein (737aa)
hypothetical protein n=2 Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI0003A8E3DB
Iron complex outer membrane receptor protein; K02014 iron complex outermembrane recepter protein Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
TonB-dependent receptor plug
13_1_40cm_3_scaffold_919_23
unknown

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comp(21364..21861)
DNA (498bp) protein (166aa)

This feature has no annotations

13_1_40cm_3_scaffold_919_24
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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22196..22660
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D6_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_3_scaffold_919_25
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

22665..23660
DNA (996bp) protein (332aa)
Putative uncharacterized protein id=4691060 bin=GWA2_Ignavibacteria_55_11 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome rbh
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
hypothetical protein
13_1_40cm_3_scaffold_919_26
unknown

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comp(23573..23965)
DNA (393bp) protein (131aa)

This feature has no annotations

13_1_40cm_3_scaffold_919_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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24006..25310
DNA (1305bp) protein (435aa)
DeoR family transcriptional regulator n=1 Tax=Vibrio breoganii RepID=UPI0003712434
proton/peptide symporter family protein; K03305 proton-dependent oligopeptide transporter, POT family Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
di-/tripeptide transporter
13_1_40cm_3_scaffold_919_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

25514..26605
DNA (1092bp) protein (364aa)
Di-/tripeptide transporter n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2S0C2_9DELT
proton/peptide symporter family protein; K03305 proton-dependent oligopeptide transporter, POT family Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
proton/peptide symporter family protein
13_1_40cm_3_scaffold_919_29
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(26613..27221)
DNA (609bp) protein (203aa)
hypothetical protein id=15193866 bin=GWC2_NOV_55_46 species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
hypothetical protein Tax=GWC2_Deltaproteobacteria_55_46b_curated
13_1_40cm_3_scaffold_919_30
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(27218..28198)
DNA (981bp) protein (327aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q301_9FIRM
oligopeptide/dipeptide ABC transporter, ATPase subunit
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:AHG90216.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying items 1-30 of 39 in total

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