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13_1_40cm_3_scaffold_1549

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1549_1
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

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2..481
DNA (480bp) protein (160aa)
ABC transporter permease n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2J0J3_9BURK
ABC transporter permease; K05773 tungstate transport system permease protein Tax=RBG_13_Actinobacteria_35_12_curated
binding-protein dependent transport system inner membrane protein
13_1_40cm_3_scaffold_1549_2
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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474..1475
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037E4F05
ABC transporter; K06857 tungstate transport system ATP-binding protein Tax=GWC2_Gemmatimonadetes_71_10_curated
ABC transporter-like protein
13_1_40cm_3_scaffold_1549_3
Raphidiopsis brookii, Raphidiopsis, Nostocales, Cyanobacteria, Bacteria

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1479..1883
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=Raphidiopsis brookii D9 RepID=D4TMF6_9NOST
putative 6-pyruvoyl tetrahydropterin synthase
Uncharacterized protein {ECO:0000313|EMBL:EFA74380.1}; TaxID=533247 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Raphidiopsis.;" source="Raphidiopsis brookii D9.;"
13_1_40cm_3_scaffold_1549_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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1888..2652
DNA (765bp) protein (255aa)
formate dehydrogenase family accessory protein (FdhD) Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative formate dehydrogenase family accessory protein (FdhD) id=3910770 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fdhD; formate dehydrogenase family accessory protein fdhd
13_1_40cm_3_scaffold_1549_5

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2649..3080
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003713DB1
Marine sediment metagenome DNA, contig: S01H1_S29705 {ECO:0000313|EMBL:GAG36608.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
CoA-binding protein
13_1_40cm_3_scaffold_1549_6
unknown

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3080..3874
DNA (795bp) protein (265aa)

This feature has no annotations

13_1_40cm_3_scaffold_1549_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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3876..4487
DNA (612bp) protein (204aa)
molybdopterin-guanine dinucleotide biosynthesis protein A; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Molybdopterin-guanine dinucleotide biosynthesis protein A
Molybdenum cofactor guanylyltransferase id=4621961 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_1549_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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4469..5002
DNA (534bp) protein (178aa)
Molybdopterin-guanine dinucleotide biosynthesis protein B MobB n=1 Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G3H8_9DELT
Molybdopterin-guanine dinucleotide biosynthesis protein B Tax=GWC2_Gemmatimonadetes_71_10_curated
molybdopterin-guanine dinucleotide biosynthesis protein B
13_1_40cm_3_scaffold_1549_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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4999..6237
DNA (1239bp) protein (413aa)
molybdenum cofactor synthesis domain-containing protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
MoeA domain protein domain I and II
Molybdenum cofactor synthesis domain protein id=3806663 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_1549_10
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6237..7058
DNA (822bp) protein (274aa)
diguanylate cyclase Tax=RBG_13_Deltaproteobacteria_61_14_curated
Diguanylate cyclase id=4516555 bin=GWC2_Nitrospirae-rel_56_14 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
diguanylate cyclase
13_1_40cm_3_scaffold_1549_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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7213..8001
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003697360
sensor histidine kinase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
13_1_40cm_3_scaffold_1549_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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8005..8808
DNA (804bp) protein (268aa)
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TVD4_9CHLR
sensor histidine kinase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
putative two-component sensor histidine kinase protein
13_1_40cm_3_scaffold_1549_13

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comp(8811..10472)
DNA (1662bp) protein (554aa)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MPW0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EQB63050.1}; TaxID=1379698 species="Bacteria.;" source="candidate division Zixibacteria bacterium RBG-1.;"
etfD; electron-transferring-flavoprotein dehydrogenase
13_1_40cm_3_scaffold_1549_14
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(10465..10719)
DNA (255bp) protein (85aa)
Electron transfer flavoprotein subunit alpha n=1 Tax=Melioribacter roseus (strain P3M) RepID=I7A846_MELRP
etfA; electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
electron transfer flavoprotein subunit alpha
13_1_40cm_3_scaffold_1549_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(10670..11122)
DNA (453bp) protein (151aa)
etfA; electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit Tax=GWC2_Gemmatimonadetes_71_10_curated
electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit id=24469728 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
electron transfer flavoprotein alpha/beta-subunit
13_1_40cm_3_scaffold_1549_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(11331..12083)
DNA (753bp) protein (251aa)
Electron transfer flavoprotein subunit beta n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AKP2_IGNAJ id=5223689 bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
etfB; electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
etfB; electron transfer flavoprotein subunit beta
13_1_40cm_3_scaffold_1549_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(12120..13010)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A837_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_1549_18
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(13175..14152)
DNA (978bp) protein (326aa)
hypothetical protein Tax=RBG_13_Ignavibacteria_36_8_curated
Putative uncharacterized protein id=4924174 bin=GWA2_Ignavibacteria_55_11 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein
13_1_40cm_3_scaffold_1549_19
GWA2_Ignavibacteriae_55_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(14142..14882)
DNA (741bp) protein (247aa)
hypothetical protein Tax=GWA2_Ignavibacteriae_55_25_curated
13_1_40cm_3_scaffold_1549_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(14908..15066)
DNA (159bp) protein (53aa)
gcdH; glutaryl-CoA dehydrogenase (EC:1.3.99.7)
gcdH; glutaryl-CoA dehydrogenase (EC:1.3.99.7); K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Glutaryl-CoA dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABA7_GEMAT
Displaying 20 items

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