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13_1_40cm_3_scaffold_1830

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1830_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1..1140)
DNA (1140bp) protein (380aa)
Oxidoreductase domain protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KYR9_HALH1
oxidoreductase domain protein
Oxidoreductase domain protein {ECO:0000313|EMBL:AHG89161.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_1830_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1137..1883)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Eudoraea adriatica RepID=UPI00036D3B72
protein of unknown function DUF1080
Uncharacterized protein {ECO:0000313|EMBL:AHG93132.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_1830_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1925..3178)
DNA (1254bp) protein (418aa)
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AHG87912.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
anion:cation symporter family protein; K08191 MFS transporter, ACS family, hexuronate transporter id=24430143 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Nafulsella turpanensis genus=Nafulsella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
13_1_40cm_3_scaffold_1830_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3212..4111
DNA (900bp) protein (300aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0KFL5_9BACT
Xylose isomerase domain-containing protein TIM barrel
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AHG93156.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_1830_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(4120..5148)
DNA (1029bp) protein (343aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:00002
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI00037C2CFC
Mannonate dehydratase
13_1_40cm_3_scaffold_1830_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(5145..6113)
DNA (969bp) protein (323aa)
PfkB domain-containing protein; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PfkB domain-containing protein; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] id=12556857 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PfkB domain-containing protein
13_1_40cm_3_scaffold_1830_7

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comp(6110..6745)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI000364AA62
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48720.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
2-dehydro-3-deoxyphosphogluconate aldolase
13_1_40cm_3_scaffold_1830_8
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(6738..8069)
DNA (1332bp) protein (444aa)
uxaB3; tagaturonate reductase (EC:1.1.1.58)
Tagaturonate reductase {ECO:0000313|EMBL:CCH01731.1}; EC=1.1.1.58 {ECO:0000313|EMBL:CCH01731.1};; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" s
Tagaturonate reductase n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0KC78_9BACT
13_1_40cm_3_scaffold_1830_9
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

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comp(8085..8882)
DNA (798bp) protein (266aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AWW2_HERA2
short-chain dehydrogenase/reductase SDR
Tax=BJP_08E140C01_Coriobacteriales_62_12
13_1_40cm_3_scaffold_1830_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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8956..9480
DNA (525bp) protein (175aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF
methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Nevskia ramosa RepID=UPI0003B76409
Methylated-DNA--protein-cysteine methyltransferase
13_1_40cm_3_scaffold_1830_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(9499..9717)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Lawsonia intracellularis N343 RepID=M1GIJ5_LAWIN
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Translation initiation factor IF-1
13_1_40cm_3_scaffold_1830_12
CSP1_5_NC10, NC10, Bacteria

Not on your lists

10146..10871
DNA (726bp) protein (242aa)
XRE family transcriptional regulator id=14431418 bin=bin3_NC10 species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin3_NC10 organism_group=NC10
XRE family transcriptional regulator Tax=CSP1_5_NC10
XRE family transcriptional regulator
13_1_40cm_3_scaffold_1830_13
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

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comp(10792..11274)
DNA (483bp) protein (161aa)
Phosphohydrolase n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LV67_SYNAS
putative NTP pyrophosphohydrolase Tax=RBG_13_Caldithrix_44_9_curated
phosphohydrolase
13_1_40cm_3_scaffold_1830_14
unknown

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comp(11308..11802)
DNA (495bp) protein (165aa)

This feature has no annotations

13_1_40cm_3_scaffold_1830_15
unknown

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11858..12814
DNA (957bp) protein (319aa)

This feature has no annotations

13_1_40cm_3_scaffold_1830_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12808..13320
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_APKG10H12 RepID=B3TC68_9ZZZZ
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Protein of unknown function DUF2911
13_1_40cm_3_scaffold_1830_17
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

13324..14829
DNA (1506bp) protein (502aa)
ligB; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RBG_16_Actinobacteria_68_12_curated
ligB; ATP-dependent DNA ligase (EC:6.5.1.1)
Probable DNA ligase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y6Z4_SORCE
13_1_40cm_3_scaffold_1830_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14795..17620)
DNA (2826bp) protein (942aa)
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.1.-); K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] Tax=GWC2_Gemmatimonadetes_71_10_curated
Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJ99_CHLTF
DNA polymerase III subunit epsilon family exonuclease
13_1_40cm_3_scaffold_1830_19
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

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17750..18361
DNA (612bp) protein (204aa)
isochorismatase (2,3 dihydro-2,3 dihydroxybenzoatesynthase) (Superoxide-inducible protein 1) (SOI1) (EC:3.3.2.1)
Isochorismatase (2,3 dihydro-2,3 dihydroxybenzoatesynthase) (Superoxide-inducible protein 1) (SOI1) {ECO:0000313|EMBL:ACM07079.1}; EC=3.3.2.1 {ECO:0000313|EMBL:ACM07079.1};; TaxID=309801 species="Bact
Isochorismatase (2,3 dihydro-2,3 dihydroxybenzoatesynthase) (Superoxide-inducible protein 1) (SOI1) n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L582_THERP
13_1_40cm_3_scaffold_1830_20
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(18358..18762)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SUC5_PLAL2
hypothetical protein Tax=RBG_16_Actinobacteria_67_10_curated
hypothetical protein
13_1_40cm_3_scaffold_1830_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

19425..21407
DNA (1983bp) protein (661aa)
PKD domain containing protein
DNA polymerase III subunit alpha Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_3_scaffold_1830_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(21370..21909)
DNA (540bp) protein (180aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_3_scaffold_1830_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(21909..22262)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Mycobacterium xenopi RIVM700367 RepID=I0RFG8_MYCXE
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_3_scaffold_1830_24
Geobacillus kaustophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22318..23319
DNA (1002bp) protein (334aa)
Thioredoxin reductase-like protein n=2 Tax=Geobacillus RepID=A4IQB5_GEOTN
NAD(P)-binding family protein {ECO:0000313|EMBL:KJE28092.1}; TaxID=1462 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus kaustophilus.;"
thioredoxin reductase
13_1_40cm_3_scaffold_1830_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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23358..24077
DNA (720bp) protein (240aa)
putative serine/threonine protein kinase (EC:2.7.11.1); K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6N9_GEMAT
protein kinase
13_1_40cm_3_scaffold_1830_26
Turneriella parva, Turneriella, Spirochaetia, Spirochaetes, Bacteria

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24172..25068
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4B4K0_TURPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM12207.1}; Flags: Precursor;; TaxID=869212 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Turneriella.;" source="Turneriella parva (strain
Displaying 26 items

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