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13_1_40cm_3_scaffold_2616

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Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2616_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2..520
DNA (519bp) protein (173aa)
def; peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] Tax=RBG_16_Gemmatimonadetes_66_8_curated
def; peptide deformylase Def (EC:3.5.1.88)
Peptide deformylase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TUC7_9PROT
13_1_40cm_3_scaffold_2616_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

521..1480
DNA (960bp) protein (320aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Methionyl-tRNA formyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A606_GEMAT
Methionyl-tRNA formyltransferase
13_1_40cm_3_scaffold_2616_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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1477..2094
DNA (618bp) protein (206aa)
thiamine-phosphate pyrophosphorylase (EC:2.5.1.3); K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q2E7_9FIRM
13_1_40cm_3_scaffold_2616_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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2091..2303
DNA (213bp) protein (71aa)
Bifunctional sulfur carrier protein/thiazole synthase protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VLA9_9SPHN
thiamine biosynthesis protein ThiS Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
bifunctional sulfur carrier protein/thiazole synthase
13_1_40cm_3_scaffold_2616_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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2308..3105
DNA (798bp) protein (266aa)
thiG; thiazole biosynthesis protein thiG Tax=RBG_16_Gemmatimonadetes_66_8_curated
Thiazole synthase id=3894134 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
thiG; thiazole biosynthesis protein thiG
13_1_40cm_3_scaffold_2616_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3272..4327
DNA (1056bp) protein (352aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadet
Putative rRNA methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A605_GEMAT
sun protein
13_1_40cm_3_scaffold_2616_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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4327..5094
DNA (768bp) protein (256aa)
serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000373776F
serine/threonine protein kinase with pasta sensor(s)
13_1_40cm_3_scaffold_2616_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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5091..5765
DNA (675bp) protein (225aa)
rpe; ribulose-5-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribulose-phosphate 3-epimerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A603_GEMAT
ribulose-phosphate 3-epimerase
13_1_40cm_3_scaffold_2616_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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5762..6253
DNA (492bp) protein (164aa)
Thiol-disulfide oxidoreductase ResA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A602_GEMAT
resA; thiol-disulfide oxidoreductase ResA Tax=GWC2_Gemmatimonadetes_71_10_curated
resA; thiol-disulfide oxidoreductase ResA
13_1_40cm_3_scaffold_2616_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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6243..7181
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Krokinobacter sp. (strain 4H-3-7-5) RepID=F4AYD7_KROS4
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_2616_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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7174..8205
DNA (1032bp) protein (344aa)
gcp; O-sialoglycoprotein endopeptidase (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RBG_16_Gemmatimonadetes_66_8_curated
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=TSAD_GEMAT
O-sialoglycoprotein endopeptidase
13_1_40cm_3_scaffold_2616_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

8202..9056
DNA (855bp) protein (285aa)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-); K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A600_GEMAT
13_1_40cm_3_scaffold_2616_13
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

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comp(9012..10799)
DNA (1788bp) protein (596aa)
Putative Iron permease FTR1, contains cytochrome c region n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZDP4_9BACT
Putative Iron permease FTR1, contains cytochrome c region {ECO:0000313|EMBL:CCQ91610.1}; TaxID=1266370 species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source=
iron permease FTR1
13_1_40cm_3_scaffold_2616_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10823..11215)
DNA (393bp) protein (131aa)
holo-acyl-carrier-protein synthase (EC:2.7.8.7); K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7] Tax=RBG_16_Gemmatimonadetes_66_8_curated
4''''-phosphopantetheinyl transferase n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B3E97D
holo-acyl-carrier-protein synthase
13_1_40cm_3_scaffold_2616_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11212..13368)
DNA (2157bp) protein (719aa)
Predicted carboxypeptidase n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SQD4_HAHCH
carboxypeptidase Tax=GWC2_Gemmatimonadetes_71_10_curated
carboxypeptidase
13_1_40cm_3_scaffold_2616_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13383..14636)
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FEZ1_STIAD
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_2616_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14633..15334)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034C0CA3
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_2616_18
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15400..16311)
DNA (912bp) protein (304aa)
NlpC/P60 family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Z3_GEMAT
NlpC/P60 family protein
NlpC/P60 family protein {ECO:0000313|EMBL:BAH37653.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_1_40cm_3_scaffold_2616_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16304..17242)
DNA (939bp) protein (313aa)
peptidase S58 DmpA Tax=RBG_16_Gemmatimonadetes_66_8_curated
peptidase S58 DmpA
hypothetical protein id=14630646 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin9_gal15 organism_group=GAL15
13_1_40cm_3_scaffold_2616_20
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

17279..17884
DNA (606bp) protein (202aa)
Two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4T1_GEMAT
two-component response regulator Tax=GWC2_Gemmatimonadetes_71_10_curated
two-component response regulator
13_1_40cm_3_scaffold_2616_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17881..18063)
DNA (183bp) protein (61aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_2616_22
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

18099..18512
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKN9_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF42561.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacte
13_1_40cm_3_scaffold_2616_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18509..19621)
DNA (1113bp) protein (371aa)
acetoacetate metabolism regulatory protein AtoC Tax=RBG_16_Gemmatimonadetes_66_8_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=4948364 bin=GWC2_Nitrospirae_57_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_3_scaffold_2616_24
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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comp(19618..19806)
DNA (189bp) protein (63aa)
winged helix family two component transcriptional regulator Tax=CSP1_3_Armatimonadetes
13_1_40cm_3_scaffold_2616_25
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19799..20752)
DNA (954bp) protein (318aa)
Diacylglycerol kinase catalytic region n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NLF9_ROSCS
diacylglycerol kinase catalytic subunit; K07029 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Conserved hypothetical protein CHP00147
13_1_40cm_3_scaffold_2616_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(20754..25166)
DNA (4413bp) protein (1471aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Z1_GEMAT
hypothetical protein; K09800 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_2616_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25168..27366)
DNA (2199bp) protein (733aa)
Bacterial surface antigen (D15) family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Z0_GEMAT
surface antigen; K07277 outer membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
surface antigen (D15)
13_1_40cm_3_scaffold_2616_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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28402..28881
DNA (480bp) protein (160aa)
Putative ABC transporter substrate binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Y9_GEMAT
ABC-type transporter, periplasmic subunit
ABC-type transporter, periplasmic subunit {ECO:0000313|EMBL:AHG90078.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_2616_29
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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28878..29798
DNA (921bp) protein (307aa)
Putative ABC transporter permease protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Y8_GEMAT
ABC-type transporter, integral membrane subunit
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AHG90077.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_2616_30
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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29764..31242
DNA (1479bp) protein (493aa)
D-alanyl-D-alanine carboxypeptidase; K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] Tax=RIFCSPLOWO2_02_FULL_Gemmati
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJV1_RHOM4
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase
Displaying items 1-30 of 37 in total

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