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13_1_40cm_3_scaffold_4491

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_4491_1
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1..504)
DNA (504bp) protein (168aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
Glutamate synthase [NADPH] large chain {ECO:0000313|EMBL:BAH40123.1}; EC=1.4.1.13 {ECO:0000313|EMBL:BAH40123.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae;
Glutamate synthase [NADPH] large chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC96_GEMAT
13_1_40cm_3_scaffold_4491_2
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(476..919)
DNA (444bp) protein (148aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
Glutamate synthase [NADPH] large chain {ECO:0000313|EMBL:BAH40123.1}; EC=1.4.1.13 {ECO:0000313|EMBL:BAH40123.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae;
Glutamate synthase [NADPH] large chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC96_GEMAT
13_1_40cm_3_scaffold_4491_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(1076..2167)
DNA (1092bp) protein (364aa)
kamA; Lysine 2,3-aminomutase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
L-lysine 2,3-aminomutase id=3345172 bin=GWF2_Lentisphaerae_50_93 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
kamA; Lysine 2,3-aminomutase
13_1_40cm_3_scaffold_4491_4
unknown

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2320..2670
DNA (351bp) protein (117aa)

This feature has no annotations

13_1_40cm_3_scaffold_4491_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(2588..3661)
DNA (1074bp) protein (358aa)
D-alanine--D-alanine ligase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
D-alanine-D-alanine ligase-like protein id=2423735 bin=GWA2_Ignavibacteriae_54_16_partial species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
ATP-grasp enzyme, D-alanine-D-alanine ligase
13_1_40cm_3_scaffold_4491_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(3658..4716)
DNA (1059bp) protein (353aa)
D-alanine-D-alanine ligase-like protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
D-alanine-D-alanine ligase-like protein id=3454609 bin=GWC2_Deltaproteobacteria_42_51 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
D-alanine-D-alanine ligase-like protein
13_1_40cm_3_scaffold_4491_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(4787..6856)
DNA (2070bp) protein (690aa)
thyX; thymidylate synthase (EC:2.1.1.148); K03465 thymidylate synthase (FAD) [EC:2.1.1.148] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
thyX; thymidylate synthase (EC:2.1.1.148)
Thymidylate synthase ThyX n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5J0_GEMAT
13_1_40cm_3_scaffold_4491_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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7077..7958
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Alicyclobacillus pohliae RepID=UPI000373C3C0
hypothetical protein; K09729 hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_3_scaffold_4491_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(7917..9236)
DNA (1320bp) protein (440aa)
rocC; amino acid permease rocC Tax=RBG_16_Gemmatimonadetes_66_8_curated
amino acid permease id=24444110 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Flexithrix dorotheae genus=Flexithrix taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
rocC; amino acid permease rocC
13_1_40cm_3_scaffold_4491_10
unknown

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comp(9237..9659)
DNA (423bp) protein (141aa)

This feature has no annotations

13_1_40cm_3_scaffold_4491_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(9659..10204)
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q607D5_METCA
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_3_scaffold_4491_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(10207..11049)
DNA (843bp) protein (281aa)
hbdA; 3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hbdA; 3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJN9_9BACT
13_1_40cm_3_scaffold_4491_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(11046..11876)
DNA (831bp) protein (277aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_3_scaffold_4491_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(11876..12709)
DNA (834bp) protein (278aa)
Band 7 protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XWH8_9BACT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_3_scaffold_4491_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(12706..13902)
DNA (1197bp) protein (399aa)
putative acyltransferase (EC:2.3.1.9); K07508 acetyl-CoA acyltransferase 2 [EC:2.3.1.16] Tax=RBG_16_Gemmatimonadetes_66_8_curated
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LEU6_9BACT
13_1_40cm_3_scaffold_4491_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(14035..16029)
DNA (1995bp) protein (665aa)
VCBS repeat-containing protein,YVTN family beta-propeller repeat protein n=1 Tax=Mycobacterium smegmatis JS623 RepID=L0J3X7_MYCSM
surface antigen gene Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
YVTN family beta-propeller repeat protein
13_1_40cm_3_scaffold_4491_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(16140..17537)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465V8_METBF
surface antigen gene Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
cell surface protein
13_1_40cm_3_scaffold_4491_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(17583..18620)
DNA (1038bp) protein (346aa)
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:CDM65964.1}; EC=1.1.1.85 {ECO:0000313|EMBL:CDM65964.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" so
3-isopropylmalate dehydrogenase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08ME8_STIAD
3-isopropylmalate dehydrogenase
13_1_40cm_3_scaffold_4491_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(18617..19258)
DNA (642bp) protein (214aa)
Double zinc ribbon
Double zinc ribbon Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_4491_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(19258..19770)
DNA (513bp) protein (171aa)
CMP/dCMP deaminase; K01493 dCMP deaminase [EC:3.5.4.12] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Cd allosteric enzyme id=3383322 bin=GWA1_Deltaproteobacteria_52_35 species=unknown genus=unknown taxon_order=Caudovirales taxon_class=unknown phylum=unknown tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
CMP/dCMP deaminase
13_1_40cm_3_scaffold_4491_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(19757..20335)
DNA (579bp) protein (193aa)
selenide, water dikinase; K01008 selenide, water dikinase [EC:2.7.9.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Ribonuclease HI n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5K0_GEMAT
ribonuclease H
13_1_40cm_3_scaffold_4491_22
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20332..21102)
DNA (771bp) protein (257aa)
Universal stress protein family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JF01_9BACT
Universal stress protein UspA {ECO:0000313|EMBL:ETX13728.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax h
13_1_40cm_3_scaffold_4491_23
unknown

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comp(21109..21345)
DNA (237bp) protein (79aa)

This feature has no annotations

13_1_40cm_3_scaffold_4491_24
Streptomyces mutabilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(21355..21867)
DNA (513bp) protein (171aa)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:000
selenophosphate synthase (EC:2.7.9.3)
Selenide, water dikinase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LK31_CHLTF
Displaying 24 items

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