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13_1_40cm_3_scaffold_868

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_868_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1..933)
DNA (933bp) protein (311aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABY7_GEMAT
permease
Permease {ECO:0000313|EMBL:AHG93091.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_868_2
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(938..1693)
DNA (756bp) protein (252aa)
ABC transporter n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037C73BE
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
ABC transporter related protein
13_1_40cm_3_scaffold_868_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(1737..2996)
DNA (1260bp) protein (420aa)
Secretion protein HlyD family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC94_GEMAT
RND family efflux transporter MFP subunit Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
secretion protein HlyD family protein
13_1_40cm_3_scaffold_868_4
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

comp(3184..7317)
DNA (4134bp) protein (1378aa)
glycoside hydrolase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B4394C rbh
glycoside hydrolase family 2 sugar binding protein Tax=RBG_16_Caldithrix_48_16_curated
glycoside hydrolase
13_1_40cm_3_scaffold_868_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(7833..8360)
DNA (528bp) protein (176aa)
beta-glucosidase n=1 Tax=Thermophagus xiamenensis RepID=UPI000255DC0D
glycoside hydrolase family 3 domain protein
Glycoside hydrolase family 3 domain protein {ECO:0000313|EMBL:AHG88100.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_868_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(8320..9759)
DNA (1440bp) protein (480aa)
Xylulokinase n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SIC9_PLABD
xylulokinase
Xylulokinase {ECO:0000313|EMBL:AHG92041.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_868_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9795..10949)
DNA (1155bp) protein (385aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=861299 species="Bacteria; Gemmati
Xylose isomerase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N0Z5_ANATU
Xylose isomerase
13_1_40cm_3_scaffold_868_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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10998..12029
DNA (1032bp) protein (344aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU000506}; EC=2.7.7.12 {ECO:0000256|RuleBase:RU000506};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyr
galactose-1-phosphate uridylyltransferase (EC:2.7.7.12)
Galactose-1-phosphate uridylyltransferase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TTA9_9CHLR
13_1_40cm_3_scaffold_868_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12031..13014
DNA (984bp) protein (328aa)
Inositol monophosphatase n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IEX0_9CHLR
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein {ECO:0000313|EMBL:CDM64830.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Py
inositol monophosphatase
13_1_40cm_3_scaffold_868_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

13011..14360
DNA (1350bp) protein (450aa)
GHMP kinase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CH81_THET1 rbh
Galactokinase {ECO:0000313|EMBL:CDM64829.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
GHMP kinase
13_1_40cm_3_scaffold_868_11
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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14437..15498
DNA (1062bp) protein (354aa)
Putative uncharacterized protein id=4483618 bin=GWF2_Lentisphaerae_57_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein Tax=GWF2_Lentisphaerae_57_35_curated
hypothetical protein
13_1_40cm_3_scaffold_868_12
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15482..15871)
DNA (390bp) protein (130aa)
Response regulator receiver domain n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQ08_SYNAS
Regulator {ECO:0000313|EMBL:KJR63066.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
response regulator receiver domain-containing protein
13_1_40cm_3_scaffold_868_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(15958..18624)
DNA (2667bp) protein (889aa)
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Multi-sensor hybrid histidine kinase id=4193472 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor hybrid histidine kinase
13_1_40cm_3_scaffold_868_14
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

18831..21386
DNA (2556bp) protein (852aa)
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:ABF42015.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ABF42015.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Cand
Multi-sensor hybrid histidine kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM85_KORVE
multi-sensor hybrid histidine kinase
13_1_40cm_3_scaffold_868_15
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21406..22851
DNA (1446bp) protein (482aa)
h16_A0780; signal transduction histidine kinase (EC:2.7.3.-)
Signal transduction histidine kinase n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XEX8_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EXJ14957.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp.
13_1_40cm_3_scaffold_868_16
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

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22848..23513
DNA (666bp) protein (222aa)
response regulator Tax=RBG_16_Chloroflexi_56_8_curated
response regulator id=14429259 bin=bin3_NC10 species=unknown genus=unknown taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
response regulator receiver, LuxR family
13_1_40cm_3_scaffold_868_17
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

23622..25514
DNA (1893bp) protein (631aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
Multi-sensor hybrid histidine kinase id=3068375 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PAS sensor protein
13_1_40cm_3_scaffold_868_18
unknown

Not on your lists

comp(25418..26092)
DNA (675bp) protein (225aa)

This feature has no annotations

13_1_40cm_3_scaffold_868_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

26508..27110
DNA (603bp) protein (201aa)
holB; DNA polymerase III delta' subunit (EC:2.7.7.7); K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA polymerase III delta' subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9U0_GEMAT
DNA polymerase III delta' subunit
13_1_40cm_3_scaffold_868_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

27107..27568
DNA (462bp) protein (154aa)
Cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9U1_GEMAT
molybdenum cofactor biosynthesis protein C; K03637 molybdenum cofactor biosynthesis protein C Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Molybdenum cofactor biosynthesis C, bacterial-type
13_1_40cm_3_scaffold_868_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

27631..28278
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9U2_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Lytic transglycosylase catalytic
13_1_40cm_3_scaffold_868_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(28296..29852)
DNA (1557bp) protein (519aa)
transglycosylase, slt family; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Lytic transglycosylase, catalytic id=3894255 bin=GWC2_Proteo_65_14_Ab886 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
Lytic transglycosylase catalytic
13_1_40cm_3_scaffold_868_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(29849..30250)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9U4_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_868_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(30260..30511)
DNA (252bp) protein (84aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_868_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(30840..31523)
DNA (684bp) protein (228aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=GWC2_Gemmatimonadetes_71_10_curated
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AER1_CARHZ
Displaying 25 items

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