ggKbase home page

13_1_40cm_3_scaffold_2616_35

Organism: 13_1_40CM_3_Gemmatimonadetes_65_8

partial RP 14 / 55 BSCG 11 / 51 ASCG 5 / 38
Location: 35078..35827

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Y4_GEMAT similarity UNIREF
DB: UNIREF100
  • Identity: 75.7
  • Coverage: 230.0
  • Bit_score: 347
  • Evalue 1.40e-92
RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 87.9
  • Coverage: 231.0
  • Bit_score: 407
  • Evalue 1.20e-110
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 75.7
  • Coverage: 230.0
  • Bit_score: 347
  • Evalue 3.90e-93

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Gemmatimonadetes_68_9 → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 750
ATGGCTCGGTCGAATGGCGGCAAGGCGAAAGCGTTTTTCCGCACCACCCCCTCCGGAGCATTCGACCAGTACCTGCAAGACATACAAAAACTCCCCCTCATCAAAGACCCTGCGGAAGAACGGCGTCTCGCTCGCCGCGTGCAACGCGGCGATGAAAAAGCCGCCGAGCGTTTGGTAACGGCCAACCTTCGTTTCGTCATCTCGTACGTAAAGAAATACCAAGGCCACGGACTCGATCTCTCCGAGTTGGTCGCCATCGGCAACGAAGGACTCCTCAAGGCCGTCAAGAAGTTCGATCCCGATCAAGGCGTCAAATTCATTTCGTACGCCGTGTGGTGGGTGCGGCAAGCGGTTCTGAAAGCGTTGGCGGAGCAGACGCGCAGCGTTCGCATTCCGCTGAATCAGAATTCCCAGCTCATTCGCATGAGCCGAACGGAGACGTATCTCTCACAGGAGCTCGGCCGGGAACCCACCGACAACGAAATCGCCCAGGCACTCGAAGACAGCGTCGAGAATGTCCGCACCGCGCGCCGCATGACGGCCGCGGAGTTGTCGCTCGACGCGCCCGTCGATCGCACCGACAAGGACGCGGCGACGCTCGGCGAGCGCTTCGCGGGACAGGAAGGCGGCGAGATCGAAGAGCGCACCGACGGCAAGTTGATGCGCGAATTCATCGACCGGATTTTCCGAAGAAGGCAGCGAGGCGATGACGCTCGAAAAGATCGGCGCACTGATGGGCGTCACTCGTGA
PROTEIN sequence
Length: 250
MARSNGGKAKAFFRTTPSGAFDQYLQDIQKLPLIKDPAEERRLARRVQRGDEKAAERLVTANLRFVISYVKKYQGHGLDLSELVAIGNEGLLKAVKKFDPDQGVKFISYAVWWVRQAVLKALAEQTRSVRIPLNQNSQLIRMSRTETYLSQELGREPTDNEIAQALEDSVENVRTARRMTAAELSLDAPVDRTDKDAATLGERFAGQEGGEIEERTDGKLMREFIDRIFRRRQRGDDARKDRRTDGRHS*