ggKbase home page

13_1_40cm_3_scaffold_2588

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2588_1
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8..1504)
DNA (1497bp) protein (499aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; My
Sensor histidine kinase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MG64_CORCM
senX3; sensor histidine kinase
13_1_40cm_3_scaffold_2588_2
unknown

Not on your lists

1767..2060
DNA (294bp) protein (98aa)

This feature has no annotations

13_1_40cm_3_scaffold_2588_3
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2076..2810
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00036E4FBB
Putative secreted lipase {ECO:0000313|EMBL:AKF07144.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandar
lpsA; lipase class 2
13_1_40cm_3_scaffold_2588_4
Penicillium digitatum, Penicillium, Eurotiales, Eurotiomycetidae, Ascomycota, Fungi

Not on your lists

2856..3320
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Penicillium digitatum RepID=K9FNE9_PEND2
Uncharacterized protein {ECO:0000313|EMBL:EKV11150.1}; TaxID=1170229 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penic
hypothetical protein
13_1_40cm_3_scaffold_2588_5
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3440..4270
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TTS4_9DELT
Glyoxalase-like domain protein
Uncharacterized protein {ECO:0000313|EMBL:ERK88854.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoco
13_1_40cm_3_scaffold_2588_6
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4390..5508
DNA (1119bp) protein (373aa)
Putative membrane protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1DBZ0_MYXXD
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:ABF90043.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoc
13_1_40cm_3_scaffold_2588_7
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5569..5931
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003644FE1
Uncharacterized protein {ECO:0000313|EMBL:KJR63700.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum th
hypothetical protein
13_1_40cm_3_scaffold_2588_8
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5870..6616)
DNA (747bp) protein (249aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LM92_HALO1
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACY16798.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" so
13_1_40cm_3_scaffold_2588_9
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6742..7701
DNA (960bp) protein (320aa)
Uncharacterized protein n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q096S4_STIAD rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAU67704.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Sti
13_1_40cm_3_scaffold_2588_10
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7720..8118)
DNA (399bp) protein (133aa)
Glyoxalase family protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8N192_CORCM
glyoxalase family protein
Glyoxalase family protein {ECO:0000313|EMBL:AFE03518.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="C
13_1_40cm_3_scaffold_2588_11

Not on your lists

comp(8187..9263)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XID3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AHZ46193.1}; TaxID=1497526 species="Bacteria; environmental samples.;" source="uncultured bacterium N27-1E.;"
exported protein of unknown function
13_1_40cm_3_scaffold_2588_12
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9395..9742
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9ENM2_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN90875.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium ce
13_1_40cm_3_scaffold_2588_13
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9763..9981)
DNA (219bp) protein (73aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAN6_ANADF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS25782.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" s
13_1_40cm_3_scaffold_2588_14
Leptospira kmetyi, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(9997..10431)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Leptospira kmetyi serovar Malaysia str. Bejo-Iso9 RepID=V6HLC2_9LEPT
Uncharacterized protein {ECO:0000313|EMBL:EQA52446.1}; TaxID=1049970 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira kmetyi serovar Malaysia str. Bejo-
hypothetical protein
13_1_40cm_3_scaffold_2588_15
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(10428..10898)
DNA (471bp) protein (157aa)
Gll1436 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NKP1_GLOVI
hypothetical protein
Gll1436 protein {ECO:0000313|EMBL:BAC89377.1}; TaxID=251221 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).;"
13_1_40cm_3_scaffold_2588_16
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10912..11286)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002DFD079
ArsR family transcriptional regulator
ArsR family transcriptional regulator {ECO:0000313|EMBL:AGP38566.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" sourc
13_1_40cm_3_scaffold_2588_17
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11347..11616
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HG52_ANADF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS27698.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" s
13_1_40cm_3_scaffold_2588_18
CSP1_5_NC10, NC10, Bacteria

Not on your lists

11718..12359
DNA (642bp) protein (214aa)
DNA-3-methyladenine glycosylase I (EC:3.2.2.20); K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] id=14431486 bin=bin3_NC10 species=Desulfovibrio salexigens genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
DNA-3-methyladenine glycosylase I (EC:3.2.2.20); K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] Tax=CSP1_5_NC10
tag; 3-methyladenine DNA glycosylase
13_1_40cm_3_scaffold_2588_19
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12363..12698)
DNA (336bp) protein (112aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8Q6_MESCW
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ADV11828.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" sourc
13_1_40cm_3_scaffold_2588_20
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12709..13947
DNA (1239bp) protein (413aa)
Major facilitator family protein MmrA n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UMU9_MYXSD rbh
MFS transporter {ECO:0000313|EMBL:AKF83352.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus ful
major facilitator family protein MmrA
13_1_40cm_3_scaffold_2588_21
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

13944..14789
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI00036EE856
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
hypothetical protein
13_1_40cm_3_scaffold_2588_22
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14776..15294)
DNA (519bp) protein (173aa)
Ankyrin domain protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PFJ8_9DELT
Ankyrin {ECO:0000313|EMBL:KFA93943.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violac
putative ankyrin repeat protein
13_1_40cm_3_scaffold_2588_23
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15291..15635)
DNA (345bp) protein (115aa)
katA; catalase; K03781 catalase [EC:1.11.1.6] Tax=RBG_13_Actinobacteria_63_9_curated
Catalase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QPD1_9DELT
katA; catalase
13_1_40cm_3_scaffold_2588_24
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15643..17589)
DNA (1947bp) protein (649aa)
katA; catalase; K03781 catalase [EC:1.11.1.6] Tax=RBG_13_Actinobacteria_63_9_curated
Catalase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MZA3_CORCM
katA; catalase
13_1_40cm_3_scaffold_2588_25
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17863..18900
DNA (1038bp) protein (346aa)
mandelate racemase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037E19C6
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:GAN76276.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;"
mandelate racemase
13_1_40cm_3_scaffold_2588_26
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18923..19471)
DNA (549bp) protein (183aa)
Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPW2_9SYNE
Uncharacterized protein {ECO:0000313|EMBL:ETW98195.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
13_1_40cm_3_scaffold_2588_27
Synechococcus sp. PCC 7335, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(19471..20736)
DNA (1266bp) protein (422aa)
Formamidase (EC:3.5.1.49)
Acetamidase/Formamidase family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPW3_9SYNE
Acetamidase/Formamidase family {ECO:0000313|EMBL:EDX87283.1}; TaxID=91464 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. PCC 7335.;"
13_1_40cm_3_scaffold_2588_28
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20895..21425)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9P5Y9_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EPX57627.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cy
hypothetical protein
13_1_40cm_3_scaffold_2588_29
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21548..21889
DNA (342bp) protein (114aa)
ABC transporter n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6ZCD1_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EWY36966.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella sti
ABC transporter related protein
13_1_40cm_3_scaffold_2588_30
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21886..23268
DNA (1383bp) protein (461aa)
Putative ABC transporter permease/ATP-binding protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNM2_RUBGI rbh
ABC transporter {ECO:0000313|EMBL:KJB96874.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KA
putative ABC transporter permease/ATP-binding protein
Displaying items 1-30 of 41 in total

View Taxonomy