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13_1_40cm_3_scaffold_10973

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_10973_1
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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comp(1..813)
DNA (813bp) protein (271aa)
Surface antigen n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SDC4_9BACT
surface antigen Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
outer membrane protein assembly complex, YaeT protein
13_1_40cm_3_scaffold_10973_2
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(953..2836)
DNA (1884bp) protein (628aa)
ATPase AAA-2 domain protein n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8WWA1_ACISM
ATPase AAA
ATPase AAA-2 domain protein {ECO:0000313|EMBL:ADW68484.1}; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain
13_1_40cm_3_scaffold_10973_3
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(2802..3290)
DNA (489bp) protein (163aa)
ATPase AAA-2 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKM6_KORVE
ATPase AAA
ATPase AAA-2 {ECO:0000313|EMBL:ABF42574.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345)
13_1_40cm_3_scaffold_10973_4
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3491..4036)
DNA (546bp) protein (182aa)
ABC transporter-like protein; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] Tax=GWC2_Geobacteraceae_58_44_curated
Lipoprotein release ABC transporter, ATP-binding protein n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EEW5_GEOBB
lolD-1; lipoprotein release ABC transporter ATP-binding protein
13_1_40cm_3_scaffold_10973_5
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(4033..5250)
DNA (1218bp) protein (406aa)
Lipoprotein releasing system, transmembrane protein, LolC/E family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKN2_KORVE
LolC/E family lipoprotein releasing system, transmembrane protein; K09808 lipoprotein-releasing system permease protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
LolC/E family lipoprotein releasing system, transmembrane protein
13_1_40cm_3_scaffold_10973_6
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(5263..6735)
DNA (1473bp) protein (491aa)
lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
Lysine--tRNA ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS62_KORVE
lysyl-tRNA synthetase
13_1_40cm_3_scaffold_10973_7
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6736..7143)
DNA (408bp) protein (136aa)
N utilization substance protein B homolog n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=NUSB_KORVE
NusB antitermination factor
NusB antitermination factor; K03625 N utilization substance protein B Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
13_1_40cm_3_scaffold_10973_8
Desulfovibrio alaskensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7143..7556)
DNA (414bp) protein (138aa)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=RISB_DESDG
6,7-dimethyl-8-ribityllumazine synthase
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000255|HAMAP-Rule:MF_00178}; Short=DMRL synthase {ECO:0000255|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000255|HAMAP-Rule:MF_00178};; Short=Lumazine synthase
13_1_40cm_3_scaffold_10973_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(7681..8145)
DNA (465bp) protein (155aa)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:CDM65787.1}; EC=1.1.1.35 {ECO:0000313|EMBL:CDM65787.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" so
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISD6_KORVE
3-hydroxyacyl-CoA dehydrogenase
13_1_40cm_3_scaffold_10973_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(8118..8507)
DNA (390bp) protein (130aa)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:CDM65787.1}; EC=1.1.1.35 {ECO:0000313|EMBL:CDM65787.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" so
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISD6_KORVE
3-hydroxyacyl-CoA dehydrogenase
13_1_40cm_3_scaffold_10973_11
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(8507..9613)
DNA (1107bp) protein (369aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase n=1 Tax=uncultured marine group II euryarchaeote EF100_57A08 RepID=A9QP30_9EURY id=5224563 bin=16ft_combo_ws3_JS1 species=uncultured marine group II euryarchaeote EF100_57A08 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
13_1_40cm_3_scaffold_10973_12
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

9755..11620
DNA (1866bp) protein (622aa)
methionine synthase I/5,10-methylenetetrahydrofolate reductase (EC:2.1.1.10); K00547 homocysteine S-methyltransferase [EC:2.1.1.10] Tax=RBG_16_Aminicenantes_63_16_curated
methionine synthase I/5,10-methylenetetrahydrofolate reductase (EC:2.1.1.10)
Methylenetetrahydrofolate reductase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHT4_CHLTF
13_1_40cm_3_scaffold_10973_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11617..12228
DNA (612bp) protein (204aa)
peptidyl-prolyl cis-trans isomerase PpiA precursor (EC:5.2.1.8)
cyclophilin type peptidyl-prolyl cis-trans isomerase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
cyclophilin type peptidyl-prolyl cis-trans isomerase id=24533233 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Schlesneria paludicola genus=Schlesneria taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_3_scaffold_10973_14
Anaerovibrio lipolyticus, Anaerovibrio, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

12225..12635
DNA (411bp) protein (137aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=82374 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonella
Peptidylprolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aminomonas paucivorans DSM 12260 RepID=E3CYI5_9BACT
13_1_40cm_3_scaffold_10973_15
RLO_PLX_64_10, Bacteria

Not on your lists

comp(12801..14201)
DNA (1401bp) protein (467aa)
Iron-sulfur cluster-binding oxidoreductase, cyano_FeS_chp family n=2 Tax=Geobacter sulfurreducens RepID=D7AKJ0_GEOSK
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
iron-sulfur cluster-binding oxidoreductase, cyano_FeS_chp family
13_1_40cm_3_scaffold_10973_16
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(14194..14778)
DNA (585bp) protein (195aa)
pgsA_2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] id=12556934 bin=CNBR_ACIDO species=Persephonella marina genus=Persephonella taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pgsA_2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
13_1_40cm_3_scaffold_10973_17
unknown

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comp(14797..15228)
DNA (432bp) protein (144aa)

This feature has no annotations

13_1_40cm_3_scaffold_10973_18
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15284..16345
DNA (1062bp) protein (354aa)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:ABL00056.1}; EC=5.1.3.14 {ECO:0000313|EMBL:ABL00056.1};; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales;
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ART5_PELPD
UDP-N-acetylglucosamine 2-epimerase
Displaying 18 items

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