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13_1_40cm_3_scaffold_1593

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1593_1
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(3..269)
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium A3 RepID=F8TTI9_9BACT
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
13_1_40cm_3_scaffold_1593_trna_1
unknown

Not on your lists

comp(584..656)
DNA (73bp)
transferRNA
13_1_40cm_3_scaffold_1593_2
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(890..4048)
DNA (3159bp) protein (1053aa)
isoleucyl-tRNA synthetase Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
Isoleucine--tRNA ligase id=4589769 bin=GWC2_Ignavibacteria_56_12 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome rbh
isoleucyl-tRNA synthetase
13_1_40cm_3_scaffold_1593_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


comp(4095..4928)
DNA (834bp) protein (278aa)
Protein RecA n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV37_KORVE
recA; recA protein; K03553 recombination protein RecA Tax=RBG_16_Acidobacteria_70_10_curated
recA protein
13_1_40cm_3_scaffold_1593_4
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(5118..6266)
DNA (1149bp) protein (383aa)
Putative TPR domain protein n=1 Tax=uncultured marine microorganism HF4000_097M14 RepID=B3T1W7_9ZZZZ
TPR repeat-containing protein Tax=RBG_13_Acidobacteria_68_16_curated
conserved protein of unknown function [Tetratricopeptide repeat][sel1-domain]
13_1_40cm_3_scaffold_1593_5
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6327..7175)
DNA (849bp) protein (283aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIH2_KORVE
3-hydroxyacyl-CoA dehydrogenase Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
3-hydroxyacyl-CoA dehydrogenase
13_1_40cm_3_scaffold_1593_6
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(7188..8366)
DNA (1179bp) protein (393aa)
acetyl-CoA acetyltransferase family protein; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
Acetyl-CoA acetyltransferase family protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1FAB1_ACIC5
acetyl-CoA acetyltransferase family protein
13_1_40cm_3_scaffold_1593_7
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(8564..9670)
DNA (1107bp) protein (369aa)
TonB family protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029J5_SOLUE
TonB family protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
TonB family protein
13_1_40cm_3_scaffold_1593_8
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

9927..10427
DNA (501bp) protein (167aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal pep
Lipoprotein signal peptidase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQI9_KORVE
signal peptidase II
13_1_40cm_3_scaffold_1593_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

10402..11322
DNA (921bp) protein (307aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source=
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037E024A
pseudouridine synthase
13_1_40cm_3_scaffold_1593_10
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11902..12873
DNA (972bp) protein (324aa)
hypothetical protein; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RBG_16_Deltaproteobacteria_54_11_curated
UDP-glucose 4-epimerase (EC:5.1.3.2)
NAD-dependent epimerase/dehydratase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUR4_9BACT
13_1_40cm_3_scaffold_1593_11
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(12854..13696)
DNA (843bp) protein (281aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltra
Release factor glutamine methyltransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RX9_SOLUE
HemK family modification methylase
13_1_40cm_3_scaffold_1593_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(13693..14796)
DNA (1104bp) protein (368aa)
Peptide chain release factor 1 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=RF1_KORVE
prfA; peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000255|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000255|HAMAP-Rule:MF_00093};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Can
13_1_40cm_3_scaffold_1593_13
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14799..15767)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M0L1_GEODF rbh
Uncharacterized protein {ECO:0000313|EMBL:GAM09549.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1
hypothetical protein
13_1_40cm_3_scaffold_1593_14
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists


comp(15779..15982)
DNA (204bp) protein (68aa)
50S ribosomal protein L31 n=1 Tax=uncultured Acidobacteria bacterium RepID=H5S9E3_9BACT
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bac
50S ribosomal protein L31
13_1_40cm_3_scaffold_1593_15
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists


16309..17997
DNA (1689bp) protein (563aa)
SSU ribosomal protein S1P; K02945 small subunit ribosomal protein S1 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
SSU ribosomal protein S1P; K02945 small subunit ribosomal protein S1 id=12555992 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
30S ribosomal protein S1
13_1_40cm_3_scaffold_1593_16
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

18058..18903
DNA (846bp) protein (282aa)
Signal peptide peptidase A n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJ44_KORVE
signal peptide peptidase SppA
Signal peptide peptidase A {ECO:0000313|EMBL:ABF43106.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koriba
13_1_40cm_3_scaffold_1593_17
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

19083..19421
DNA (339bp) protein (113aa)
Bacterial nucleoid protein Hbs n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJ45_KORVE
nucleoid protein Hbs
Bacterial nucleoid protein Hbs {ECO:0000313|EMBL:ABF43105.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis
13_1_40cm_3_scaffold_1593_18
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

19423..19902
DNA (480bp) protein (160aa)
HIT domain protein n=1 Tax=Desulfovibrio sp. A2 RepID=G2H3T0_9DELT
histidine triad (HIT) protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
histidine triad (HIT) protein
13_1_40cm_3_scaffold_1593_19
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(19937..20398)
DNA (462bp) protein (154aa)
acetyltransferase (EC:2.3.1.-); K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
GCN5-related N-acetyltransferase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFE5_9BACT
ribosomal-protein-alanine acetyltransferase
13_1_40cm_3_scaffold_1593_20
unknown

Not on your lists

20423..20686
DNA (264bp) protein (88aa)

This feature has no annotations

13_1_40cm_3_scaffold_1593_21
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

20735..21268
DNA (534bp) protein (178aa)
MoeA-like protein Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
4-diphosphocytidyl-2C-methyl-D-erythritolsynthas E id=2013955 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
pcmX; MobA-related glycosyltransferase
13_1_40cm_3_scaffold_1593_22
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

21265..22923
DNA (1659bp) protein (553aa)
Gamma-glutamyltranspeptidase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDJ7_SINAD rbh
gamma-glutamyltranspeptidase
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:AGA26888.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaer
13_1_40cm_3_scaffold_1593_23
unknown

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22983..23174
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_3_scaffold_1593_24
unknown

Not on your lists

23175..23552
DNA (378bp) protein (126aa)

This feature has no annotations

13_1_40cm_3_scaffold_1593_25
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(23553..24017)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YX03_9BACT
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
response regulator receiver protein
13_1_40cm_3_scaffold_1593_26
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(24014..25180)
DNA (1167bp) protein (389aa)
Pili retraction protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LRM4_SYNAS rbh
pili retraction protein; K02669 twitching motility protein PilT Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
pili retraction protein
13_1_40cm_3_scaffold_1593_27
R_Nitrospinae_39_10, Nitrospinae, Bacteria

Not on your lists

comp(25281..26357)
DNA (1077bp) protein (359aa)
pili retraction protein; K02669 twitching motility protein PilT Tax=RIFCSPLOWO2_01_FULL_Nitrospinae_39_10_curated
Twitching motility protein id=1955171 bin=GWB2_Nitrospirae_rel_47_37 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum) rbh
pili retraction protein
13_1_40cm_3_scaffold_1593_28
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

26412..26879
DNA (468bp) protein (156aa)
Redoxin domain-containing protein n=1 Tax=uncultured Acidobacteria bacterium RepID=G8DPN0_9BACT
peroxiredoxin-like Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen
13_1_40cm_3_scaffold_1593_29
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

26978..28132
DNA (1155bp) protein (385aa)
Adenylate/guanylate cyclase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SSM8_9BACT
Adenylate/guanylate cyclase {ECO:0000313|EMBL:BAL59164.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
regulatory protein, LuxR
Displaying items 1-30 of 32 in total

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