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13_1_40cm_3_scaffold_2043

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2043_1
Chlorobium limicola, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(2..424)
DNA (423bp) protein (141aa)
Transposase IS4 family protein n=1 Tax=Chlorobium limicola (strain DSM 245 / NBRC 103803) RepID=B3EDJ7_CHLL2
transposase IS4 family protein
Transposase IS4 family protein {ECO:0000313|EMBL:ACD89665.1}; TaxID=290315 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlo
13_1_40cm_3_scaffold_2043_2
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(1200..2081)
DNA (882bp) protein (294aa)
bcpA; carboxyvinyl-carboxyphosphonate phosphorylmutase (EC:2.7.8.23); K01003 carboxyvinyl-carboxyphosphonate phosphorylmutase [EC:2.7.8.23] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
isocitrate lyase-family protein, Putative carboxyvinyl-carboxyphosphonate phosphorylmutase (EC:2.7.8.23 4.1.3.-)
Isocitrate lyase and phosphorylmutase id=2855807 bin=GWF2_Methylomirabilis_70_14 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_2043_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2378..3445)
DNA (1068bp) protein (356aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] Tax=RBG_16_Acidobacteria_70_10_curated
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=MURA_KORVE
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
13_1_40cm_3_scaffold_2043_4
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(3576..4682)
DNA (1107bp) protein (369aa)
N-acetylglucosamine 6-phosphate deacetylase; K01443 N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMW9_KORVE
N-acetylglucosamine 6-phosphate deacetylase
13_1_40cm_3_scaffold_2043_5
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(4755..5651)
DNA (897bp) protein (299aa)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795}; Short=MurNAc-6-P etherase {ECO:0000256|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000256|HAMA
N-acetylmuramic acid 6-phosphate etherase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IND2_KORVE
murQ; N-acetylmuramic acid 6-phosphate etherase
13_1_40cm_3_scaffold_2043_6
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

5738..6445
DNA (708bp) protein (236aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJW7_KORVE
N-acetyltransferase Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_1_40cm_3_scaffold_2043_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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comp(6557..7918)
DNA (1362bp) protein (454aa)
Peptidase A2A n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QTX2_9CAUL
peptidase S1 and S6 chymotrypsin/Hap; K12600 superkiller protein 3 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
13_1_40cm_3_scaffold_2043_8
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


7940..8416
DNA (477bp) protein (159aa)
50S ribosomal protein L13 n=1 Tax=Thermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10) RepID=D2C3Y8_THENR
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
50S ribosomal protein L13
13_1_40cm_3_scaffold_2043_9
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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8467..8805
DNA (339bp) protein (113aa)
30S ribosomal protein S9 n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGN9_CHLTF
30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Ch
13_1_40cm_3_scaffold_2043_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists


9093..9719
DNA (627bp) protein (209aa)
30S ribosomal protein S2 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=RS2_KORVE
rpsB; 30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000255|HAMAP-Rule:MF_00291}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (
13_1_40cm_3_scaffold_2043_11
GWC2_Deltaproteobacteria_42_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9826..10476
DNA (651bp) protein (217aa)
tsf; elongation factor Ts; K02357 elongation factor Ts Tax=GWC2_Deltaproteobacteria_42_11_curated
translation elongation factor Ts id=15192305 bin=GWC2_NOV_55_46 species=Phascolarctobacterium sp. CAG:266 genus=Phascolarctobacterium taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_NOV_55_46 organism_group=Proteobacteria
tsf; translation elongation factor Ts
13_1_40cm_3_scaffold_2043_12
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10622..11332
DNA (711bp) protein (237aa)
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=RBG_13_Deltaproteobacteria_47_9_curated
Uridylate kinase id=8266233 bin=CD_OP8_4m species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
pyrH; uridylate kinase
13_1_40cm_3_scaffold_2043_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

11361..11921
DNA (561bp) protein (187aa)
Ribosome-recycling factor n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV34_KORVE
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=454194 species="Bacteria;
ribosome recycling factor
13_1_40cm_3_scaffold_2043_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(11975..13036)
DNA (1062bp) protein (354aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-th
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=TSAD_KORVE
DNA-binding/iron metalloprotein/AP endonuclease
13_1_40cm_3_scaffold_2043_15
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(13036..14079)
DNA (1044bp) protein (348aa)
Methylthioribose-1-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000255|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000255|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:00
Methylthioribose-1-phosphate isomerase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=MTNA_KORVE
translation initiation factor 2B subunit I
13_1_40cm_3_scaffold_2043_16
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

14099..15496
DNA (1398bp) protein (466aa)
Cobyrinic acid A,C-diamide synthase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NS98_GRAMM
cobyrinic acid A,C-diamide synthase
Cobyrinic acid A,C-diamide synthase {ECO:0000256|HAMAP-Rule:MF_00027}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensi
13_1_40cm_3_scaffold_2043_17
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15510..16964
DNA (1455bp) protein (485aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.-
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Smithella sp. ME-1 RepID=V4FHB2_9DELT rbh
13_1_40cm_3_scaffold_2043_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

16968..17264
DNA (297bp) protein (99aa)
id=12554195 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_3_scaffold_2043_19
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(17267..17932)
DNA (666bp) protein (222aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SH7_SOLUE
outer membrane chaperone Skp; K06142 outer membrane protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
outer membrane chaperone Skp
13_1_40cm_3_scaffold_2043_20
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(17963..19405)
DNA (1443bp) protein (481aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_Acidobacteri
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=GATA_CARHZ
13_1_40cm_3_scaffold_2043_21
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(19402..19683)
DNA (282bp) protein (94aa)
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_5
gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C id=4178835 bin=GWA2_Ignavibacteria_55_11 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
13_1_40cm_3_scaffold_2043_22
unknown

Not on your lists

comp(19673..19966)
DNA (294bp) protein (98aa)

This feature has no annotations

13_1_40cm_3_scaffold_2043_23
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(19992..21197)
DNA (1206bp) protein (402aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_3_scaffold_2043_24
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(21239..21403)
DNA (165bp) protein (55aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Displaying 24 items

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