ggKbase home page

13_1_40cm_3_scaffold_48844

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_48844_1
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

1..399
DNA (399bp) protein (133aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-t
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XPD0_9BACT
phenylalanyl-tRNA synthetase
13_1_40cm_3_scaffold_48844_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

396..1619
DNA (1224bp) protein (408aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO
phenylalanyl-tRNA synthetase subunit beta, non-spirochete bacterial (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LG36_CHLTF
13_1_40cm_3_scaffold_48844_3
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

1612..2358
DNA (747bp) protein (249aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283};
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITS7_KORVE
phenylalanyl-tRNA synthetase subunit beta
13_1_40cm_3_scaffold_48844_4
unknown

Not on your lists

2369..2602
DNA (234bp) protein (78aa)

This feature has no annotations

13_1_40cm_3_scaffold_48844_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

3102..3491
DNA (390bp) protein (130aa)
Metallophosphoesterase n=1 Tax=Ilyobacter polytropus (strain DSM 2926 / CuHBu1) RepID=E3HA34_ILYPC
hypothetical protein; K09769 hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
metallophosphoesterase
13_1_40cm_3_scaffold_48844_6
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

3478..3837
DNA (360bp) protein (120aa)
hypothetical protein; K09769 hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Metallophosphoesterase id=3732895 bin=GWF2_Lentisphaerae_57_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
13_1_40cm_3_scaffold_48844_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists


3855..5198
DNA (1344bp) protein (448aa)
Signal recognition particle protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024L4_SOLUE rbh
signal recognition particle subunit FFH/SRP54 (srp54)
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales
13_1_40cm_3_scaffold_48844_8
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists


5253..5492
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IHT3_9CHLR
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
rpsP; 30S ribosomal protein S16
13_1_40cm_3_scaffold_48844_9
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

5625..5855
DNA (231bp) protein (77aa)
UPF0109 protein Acid_2571 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024L6_SOLUE
RNA-binding protein; K06960 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
RNA-binding protein
13_1_40cm_3_scaffold_48844_10
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

5931..6335
DNA (405bp) protein (135aa)
Ribosome maturation factor RimM n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=RIMM_SYNFM
16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
16S rRNA processing protein RimM
13_1_40cm_3_scaffold_48844_11
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

6332..7024
DNA (693bp) protein (231aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltrans
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SIU4_9BACT
tRNA (Guanine37-N(1)-) methyltransferase
13_1_40cm_3_scaffold_48844_12
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists


7036..7386
DNA (351bp) protein (117aa)
50S ribosomal protein L19 n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SIU3_9BACT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bac
50S ribosomal protein L19
13_1_40cm_3_scaffold_48844_13
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

7457..7723
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024M3_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
hypothetical protein
13_1_40cm_3_scaffold_48844_14
unknown

Not on your lists

8452..8880
DNA (429bp) protein (143aa)

This feature has no annotations

13_1_40cm_3_scaffold_48844_15
unknown

Not on your lists

8882..9454
DNA (573bp) protein (191aa)

This feature has no annotations

Displaying 15 items

View Taxonomy