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13_1_40cm_3_scaffold_590

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_590_1
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(1..288)
DNA (288bp) protein (96aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZBZ1_TERRK
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AFL86759.1}; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseu
13_1_40cm_3_scaffold_590_2
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(323..1795)
DNA (1473bp) protein (491aa)
phosphomannomutase (EC:5.4.2.8)
Phosphomannomutase {ECO:0000313|EMBL:AEP12994.1}; EC=5.4.2.8 {ECO:0000313|EMBL:AEP12994.1};; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="
Phosphomannomutase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LF66_CHLTF
13_1_40cm_3_scaffold_590_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(1823..2809)
DNA (987bp) protein (329aa)
Nucleotidyltransferase {ECO:0000313|EMBL:CDM65330.1}; EC=2.7.7.13 {ECO:0000313|EMBL:CDM65330.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyr
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K01840 phosphomannomutase [EC:5.4.2.8] id=12556989 bin=CNBR_ACIDO species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nucleotidyl transferase
13_1_40cm_3_scaffold_590_4
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

2857..3486
DNA (630bp) protein (210aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=RIFCSPLOWO2_02_FULL_Acidobac
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00038269AA
13_1_40cm_3_scaffold_590_5
Thermodesulfatator indicus, Thermodesulfatator, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

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3470..4039
DNA (570bp) protein (190aa)
AMMECR1 domain protein n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ACT8_THEID
AMMECR1 domain-containing protein
AMMECR1 domain protein {ECO:0000313|EMBL:AEH44729.1}; TaxID=667014 species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacteriaceae; Thermodesulfatator.;" source="Thermode
13_1_40cm_3_scaffold_590_6
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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4036..4863
DNA (828bp) protein (276aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=269799
Prolipoprotein diacylglyceryl transferase n=2 Tax=Geobacter metallireducens RepID=Q39WB0_GEOMG
lgt; prolipoprotein diacylglyceryl transferase
13_1_40cm_3_scaffold_590_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(4799..6121)
DNA (1323bp) protein (441aa)
Peptidoglycan-binding LysM n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2ILE4_ANADE
peptidoglycan-binding LysM Tax=RBG_16_Acidobacteria_70_10_curated
peptidoglycan-binding LysM
13_1_40cm_3_scaffold_590_8
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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6280..7206
DNA (927bp) protein (309aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae;
cysteine synthase (EC:2.5.1.47)
Cysteine synthase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RHT1_MOOTA
13_1_40cm_3_scaffold_590_9
R_Planctomycetes_50_16, Planctomycetes, Bacteria

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7208..8587
DNA (1380bp) protein (460aa)
EMB3004/MEE32; K13832 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25] Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
shikimate dehydrogenase (EC:1.1.1.25 4.2.1.10)
Shikimate dehydrogenase / 3-dehydroquinate dehydratase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QK0_SOLUE
13_1_40cm_3_scaffold_590_10
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

8584..9636
DNA (1053bp) protein (351aa)
homoserine kinase (EC:2.7.1.39); K00872 homoserine kinase [EC:2.7.1.39] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036CE86C
homoserine kinase
13_1_40cm_3_scaffold_590_11
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

9633..10688
DNA (1056bp) protein (352aa)
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate semialdehyde dehydrogenase {ECO:0000313|EMBL:AEP12411.1}; EC=1.2.1.11 {ECO:0000313|EMBL:AEP12411.1};; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidoba
Aspartate semialdehyde dehydrogenase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDF1_CHLTF
13_1_40cm_3_scaffold_590_12
Acetohalobium arabaticum, Acetohalobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10685..11767
DNA (1083bp) protein (361aa)
histidyl-tRNA synthetase 2 (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=574087 species="Bacteria; Fi
Histidine--tRNA ligase n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QR30_ACEAZ
13_1_40cm_3_scaffold_590_13
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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11758..12468
DNA (711bp) protein (237aa)
hisG; ATP phosphoribosyltransferase catalytic subunit; K00765 ATP phosphoribosyltransferase [EC:2.4.2.17] Tax=GWC2_Geobacteraceae_53_11_curated
hisG; ATP phosphoribosyltransferase catalytic subunit (EC:2.4.2.17)
ATP phosphoribosyltransferase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M0L5_GEODF
13_1_40cm_3_scaffold_590_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12465..13754
DNA (1290bp) protein (430aa)
Histidinol-phosphate transaminase {ECO:0000256|SAAS:SAAS00083672}; EC=2.6.1.9 {ECO:0000256|SAAS:SAAS00083672};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.
histidinol dehydrogenase n=1 Tax=Butyrivibrio fibrisolvens RepID=UPI0003B2E95C rbh
histidinol dehydrogenase
13_1_40cm_3_scaffold_590_15
RLO_PLX_64_10, Bacteria

Not on your lists

13717..14805
DNA (1089bp) protein (363aa)
histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LFI7_CHLTF
13_1_40cm_3_scaffold_590_16
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14792..15376
DNA (585bp) protein (195aa)
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Magnetococcus sp. (strain MC-1) RepID=HIS7_MAGSM
13_1_40cm_3_scaffold_590_17

Not on your lists

15386..16003
DNA (618bp) protein (206aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM62790.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Imidazole glycerol phosphate synthase subunit HisH id=4724814 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hisH; imidazole glycerol phosphate synthase subunit HisH
13_1_40cm_3_scaffold_590_18
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16000..16722
DNA (723bp) protein (241aa)
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VMI4_CLOSH
13_1_40cm_3_scaffold_590_19
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

Not on your lists

16712..17464
DNA (753bp) protein (251aa)
imidazole glycerol phosphate synthase subunit HisF; K02500 cyclase [EC:4.1.3.-] Tax=RBG_16_Spirochaetes_49_21_curated
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJT6_9FIRM
Imidazole glycerol phosphate synthase cyclase subunit
13_1_40cm_3_scaffold_590_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

17461..18075
DNA (615bp) protein (205aa)
phosphoribosyl-ATP pyrophosphatase n=1 Tax=Laceyella sacchari RepID=UPI0003B3DA11
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas meth
hisI; phosphoribosyl-AMP cyclohydrolase;phosphoribosyl-ATP diphosphatase
13_1_40cm_3_scaffold_590_21
RLO_PLX_64_10, Bacteria

Not on your lists

18225..19667
DNA (1443bp) protein (481aa)
anthranilate synthase subunit I n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B6DB9D
anthranilate synthase component I Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
anthranilate synthase, component I
13_1_40cm_3_scaffold_590_22
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19664..20221
DNA (558bp) protein (186aa)
Anthranilate synthase subunit II {ECO:0000313|EMBL:EST51678.1}; EC=4.1.3.27 {ECO:0000313|EMBL:EST51678.1};; TaxID=1408254 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibac
Anthranilate synthase subunit II n=1 Tax=Brevibacillus panacihumi W25 RepID=V6M8L5_9BACL
pabA; para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
13_1_40cm_3_scaffold_590_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

20218..21225
DNA (1008bp) protein (336aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18) id=14626074 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18) Tax=CSP1_6_Rokubacteria
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
13_1_40cm_3_scaffold_590_24
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

21240..21764
DNA (525bp) protein (175aa)
trpC; indole-3-glycerol-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
indole-3-glycerol-phosphate synthase n=1 Tax=Methylobacterium sp. 77 RepID=UPI000372BE60
indole-3-glycerol phosphate synthase
13_1_40cm_3_scaffold_590_25
unknown

Not on your lists

comp(21749..21931)
DNA (183bp) protein (61aa)

This feature has no annotations

13_1_40cm_3_scaffold_590_26
GWA2_Deltaproteobacteria_54_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21976..22605
DNA (630bp) protein (210aa)
trpF; N-(5'-phosphoribosyl)anthranilate isomerase (EC:5.3.1.24); K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24] Tax=GWA2_Deltaproteobacteria_54_12_curated
N-(5'-phosphoribosyl)anthranilate isomerase id=4714996 bin=GWC2_Nitrospirae-rel_56_14 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
trpF; N-(5'-phosphoribosyl)anthranilate isomerase
13_1_40cm_3_scaffold_590_27
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

22602..23768
DNA (1167bp) protein (389aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133, ECO:0000256|SAAS:SAAS00015859};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobac
trpB; tryptophan synthase subunit beta TrpB (EC:4.2.1.20)
tryptophan synthase subunit alpha n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003670A30
13_1_40cm_3_scaffold_590_28
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

23778..24584
DNA (807bp) protein (269aa)
tryptophan synthase subunit alpha (EC:4.2.1.20); K01695 tryptophan synthase alpha chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
tryptophan synthase subunit alpha (EC:4.2.1.20)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037702E5
13_1_40cm_3_scaffold_590_29
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

24581..24859
DNA (279bp) protein (93aa)
Chorismate mutase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
Chorismate mutase
Chorismate mutase id=4016947 bin=GWC2_Pelobacter_58_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
13_1_40cm_3_scaffold_590_30

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24861..25646
DNA (786bp) protein (262aa)
Prephenate dehydrogenase (TyrA2) {ECO:0000313|EMBL:AIF14886.1}; EC=1.3.1.12 {ECO:0000313|EMBL:AIF14886.1};; TaxID=1456242 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured
prephenate dehydrogenase n=1 Tax=Salisaeta longa RepID=UPI0003B34774
tyrA; prephenate dehydrogenase
Displaying items 1-30 of 34 in total

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