ggKbase home page

13_1_40cm_3_scaffold_2411

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2411_1
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

2..3103
DNA (3102bp) protein (1034aa)
Putative ski2-type helicase n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TAX6_9EURY
ski2-like helicase Tax=RBG_16_Archaea_50_20_curated
ski2-like helicase
13_1_40cm_3_scaffold_2411_2
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

3181..4266
DNA (1086bp) protein (362aa)
myo-inositol-1-phosphate synthase; K01858 myo-inositol-1-phosphate synthase [EC:5.5.1.4] Tax=RBG_13_Bathyarchaeota_46_16b_curated
myo-inositol-1-phosphate synthase (EC:5.5.1.4)
Myo-inositol-1-phosphate synthase; K01858 myo-inositol-1-phosphate synthase [EC:5.5.1.4] id=5240582 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
13_1_40cm_3_scaffold_2411_3
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(4263..5399)
DNA (1137bp) protein (379aa)
dys-1; deoxyhypusine synthase (EC:2.5.1.46)
Deoxyhypusine synthase-like protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YJD3_9BACT
putative deoxyhypusine synthase Tax=RBG_16_Thaumarchaeota_49_8_curated
13_1_40cm_3_scaffold_2411_4
unknown

Not on your lists

comp(5545..5838)
DNA (294bp) protein (98aa)

This feature has no annotations

13_1_40cm_3_scaffold_2411_5
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(6205..7410)
DNA (1206bp) protein (402aa)
deaD; DEAD/DEAH box helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13] Tax=RBG_16_Archaea_50_20_curated
RNA helicase n=1 Tax=Alicyclobacillus pohliae RepID=UPI0003725B95
DEAD/DEAH box helicase
13_1_40cm_3_scaffold_2411_6
unknown

Not on your lists

comp(7790..8005)
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_40cm_3_scaffold_2411_7
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(8074..9288)
DNA (1215bp) protein (405aa)
ORC1-type DNA replication protein n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BL96_HYPBU rbh
cdc6; cell division control protein 6; K10725 archaeal cell division control protein 6 Tax=RBG_16_Archaea_50_20_curated
cdc6; cell division control protein 6
13_1_40cm_3_scaffold_2411_8
unknown

Not on your lists

comp(9400..10098)
DNA (699bp) protein (233aa)

This feature has no annotations

13_1_40cm_3_scaffold_2411_9
unknown

Not on your lists

comp(10245..11321)
DNA (1077bp) protein (359aa)

This feature has no annotations

13_1_40cm_3_scaffold_2411_10
uncultured virus, Viruses

Not on your lists

comp(11448..12197)
DNA (750bp) protein (250aa)
Methyltransferase FkbM family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TKJ4_NIAKG
SAM-dependent methyltransferase {ECO:0000313|EMBL:AIW56758.1}; TaxID=340016 species="Viruses; environmental samples.;" source="uncultured virus.;"
hypothetical protein
13_1_40cm_3_scaffold_2411_11

Not on your lists

comp(12241..13245)
DNA (1005bp) protein (335aa)
hypothetical protein n=5 Tax=cellular organisms RepID=UPI00037542C4
NDP-hexose 3-C-methyltransferase TylCIII {ECO:0000313|EMBL:AIF09585.1}; TaxID=1456138 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_38_E02.;"
methyltransferase
13_1_40cm_3_scaffold_2411_12
unknown

Not on your lists

comp(14105..15547)
DNA (1443bp) protein (481aa)

This feature has no annotations

13_1_40cm_3_scaffold_2411_13
unknown

Not on your lists

15650..15775
DNA (126bp) protein (42aa)

This feature has no annotations

13_1_40cm_3_scaffold_2411_14

Not on your lists

15960..16424
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0B8T7_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:AIF13209.1}; TaxID=1456212 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_60_F11.;"
hypothetical protein
13_1_40cm_3_scaffold_2411_15
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16885..17595)
DNA (711bp) protein (237aa)
KaiC domain-containing protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12V49_METBU
hypothetical protein
KaiC domain-containing protein {ECO:0000313|EMBL:ABE52677.1}; TaxID=259564 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanoc
13_1_40cm_3_scaffold_2411_16
Pyrococcus furiosus, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(17779..18648)
DNA (870bp) protein (290aa)
Uncharacterized protein n=2 Tax=Pyrococcus furiosus RepID=I6V2V8_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAL80226.1}; TaxID=186497 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus furiosus (strain ATC
13_1_40cm_3_scaffold_2411_17
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists


19312..19749
DNA (438bp) protein (146aa)
50S ribosomal protein L22P n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TAY8_9ARCH
50S ribosomal protein L22 Tax=RBG_13_Bathyarchaeota_38_9_curated
rpl22p; 50S ribosomal protein L22
13_1_40cm_3_scaffold_2411_18

Not on your lists


19753..20505
DNA (753bp) protein (251aa)
30S ribosomal protein S3 n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TB80_METSL
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S3
13_1_40cm_3_scaffold_2411_19
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists


20516..20701
DNA (186bp) protein (62aa)
50S ribosomal protein L29P; K02904 large subunit ribosomal protein L29 Tax=RBG_13_Bathyarchaeota_38_9_curated
13_1_40cm_3_scaffold_2411_20
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

20705..20980
DNA (276bp) protein (92aa)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|H
Ribonuclease P protein component 1 n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D7K9_METSW
ribonuclease P protein component 1
13_1_40cm_3_scaffold_2411_21
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists


20974..21309
DNA (336bp) protein (112aa)
30S ribosomal protein S17P n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=RS17_UNCMA
rps17p; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RBG_13_Bathyarchaeota_38_9_curated
rps17p; 30S ribosomal protein S17P
13_1_40cm_3_scaffold_2411_22
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists


21309..21746
DNA (438bp) protein (146aa)
50S ribosomal protein L14 n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IK69_NITGG
rpl14p; 50S ribosomal protein L14p Tax=RBG_13_Bathyarchaeota_38_9_curated
LSU ribosomal protein L14P
13_1_40cm_3_scaffold_2411_23

Not on your lists


21748..22119
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Sulfolobales archaeon Acd1 RepID=UPI00036DCC0A
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24
13_1_40cm_3_scaffold_2411_24
Desulfurococcus mucosus, Desulfurococcus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists


22124..22867
DNA (744bp) protein (248aa)
30S ribosomal protein S4e n=1 Tax=Desulfurococcus mucosus (strain ATCC 35584 / DSM 2162 / JCM 9187 / O7/1) RepID=E8RAM8_DESM0
30S ribosomal protein S4
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; TaxID=765177 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Desulfurococcus.;" source="Desulfurococc
13_1_40cm_3_scaffold_2411_25

Not on your lists


22873..23409
DNA (537bp) protein (179aa)
50S ribosomal protein L5 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFV4_NITGG
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
LSU ribosomal protein L5P
13_1_40cm_3_scaffold_2411_26
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


23592..23975
DNA (384bp) protein (128aa)
30S ribosomal protein S8 n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJP2_PYRSN
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S8P
13_1_40cm_3_scaffold_2411_27

Not on your lists


23985..24563
DNA (579bp) protein (193aa)
50S ribosomal protein L6 n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=RL6_THEKO
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl6p; 50S ribosomal protein L6
13_1_40cm_3_scaffold_2411_28
Thermoproteus tenax, Thermoproteus, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

24566..25087
DNA (522bp) protein (174aa)
50S ribosomal protein L32e n=1 Tax=Thermoproteus tenax (strain ATCC 35583 / NBRC 100435 / JCM 9277 / Kra 1) RepID=G4RLJ7_THETK
rpl32e; putative 50S ribosomal protein L32e
50S ribosomal protein L32e {ECO:0000256|HAMAP-Rule:MF_00810}; TaxID=768679 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Thermoproteus.;" source="Thermoproteus tena
13_1_40cm_3_scaffold_2411_29
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

25084..25512
DNA (429bp) protein (143aa)
50S ribosomal protein L19e n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZD7_METFV
LSU ribosomal protein l19e; K02885 large subunit ribosomal protein L19e Tax=RBG_13_Bathyarchaeota_38_9_curated
50S ribosomal protein L19e
13_1_40cm_3_scaffold_2411_30
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


25516..25674
DNA (159bp) protein (53aa)
50S ribosomal protein L18P n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZD8_METFV
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=523846 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methan
Displaying 30 items

View Taxonomy