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13_1_40cm_3_scaffold_327

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_327_1
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(82..594)
DNA (513bp) protein (171aa)
Transcription elongation factor NusA n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TXG0_METKA
nusA; transcription elongation factor NusA-like protein Tax=RBG_16_Archaea_50_20_curated
nusA; transcription elongation factor NusA-like protein
13_1_40cm_3_scaffold_327_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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851..1414
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PGK4_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU61709.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinen
13_1_40cm_3_scaffold_327_3
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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1775..2914
DNA (1140bp) protein (380aa)
succinyl-CoA synthetase subunit beta; K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Succinyl-CoA synthetase beta chain n=1 Tax=Fervidicoccus fontis (strain DSM 19380 / VKM B-2539 / Kam940) RepID=I0A048_FERFK rbh
succinyl-CoA synthetase subunit beta
13_1_40cm_3_scaffold_327_4
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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2915..3796
DNA (882bp) protein (294aa)
sucD; succinyl-CoA synthetase subunit alpha (EC:6.2.1.5); K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=RBG_13_Bathyarchaeota_46_16b_curated
sucD; succinyl-CoA synthetase subunit alpha (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=Q9YD40_AERPE
13_1_40cm_3_scaffold_327_5
unknown

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4080..4601
DNA (522bp) protein (174aa)

This feature has no annotations

13_1_40cm_3_scaffold_327_6
RBG_16_Archaea_50_20_curated, Archaea

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comp(4859..5671)
DNA (813bp) protein (271aa)
putative ribosomal RNA small subunit methyltransferase A; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RBG_16_Archaea_50_20_curated
Probable ribosomal RNA small subunit methyltransferase A n=1 Tax=Thermococcus sp. AM4 RepID=G2M2H2_9EURY
16S rRNA methyltransferase
13_1_40cm_3_scaffold_327_7
RBG_16_Archaea_50_20_curated, Archaea

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comp(5676..6260)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S1Z8_FERPA
DNA-binding protein; K07572 putative nucleotide binding protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_3_scaffold_327_8
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(6409..6738)
DNA (330bp) protein (110aa)
RNA polymerase Rpb4; K03051 DNA-directed RNA polymerase subunit F [EC:2.7.7.6] Tax=RBG_16_Archaea_50_20_curated
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI000364BA4E
rpb4; RNA polymerase Rpb4
13_1_40cm_3_scaffold_327_9
RBG_16_Archaea_50_20_curated, Archaea

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comp(6738..7037)
DNA (300bp) protein (100aa)
50S ribosomal protein L21e n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BNB3_HYPBU
50S ribosomal protein L21; K02889 large subunit ribosomal protein L21e Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L21e
13_1_40cm_3_scaffold_327_10
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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7087..8157
DNA (1071bp) protein (357aa)
methyltransferase-like protein; K07446 tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Methyltransferase n=1 Tax=Methanothermobacter thermautotrophicus CaT2 RepID=T2GIT0_METTF
methyltransferase-like protein
13_1_40cm_3_scaffold_327_11
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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8158..9078
DNA (921bp) protein (307aa)
Ribonuclease Z (EC:3.1.26.11)
Ribonuclease Z n=1 Tax=uncultured archaeon RepID=D1JEG1_9ARCH
ribonuclease Z Tax=RBG_13_Bathyarchaeota_46_16b_curated
13_1_40cm_3_scaffold_327_12
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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comp(9514..10071)
DNA (558bp) protein (186aa)
UPF0200 protein PF1294 n=2 Tax=Pyrococcus furiosus RepID=Y1294_PYRFU
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
hypothetical protein
13_1_40cm_3_scaffold_327_13
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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10254..10721
DNA (468bp) protein (156aa)
LigT; 2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] Tax=RBG_13_Bathyarchaeota_38_9_curated
2'-5' RNA ligase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TVM2_METKA
LigT; 2'-5' RNA ligase
13_1_40cm_3_scaffold_327_14
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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10772..12190
DNA (1419bp) protein (473aa)
tRNA adenylyltransferase (EC:2.7.7.72); K07558 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] Tax=RBG_13_Bathyarchaeota_38_9_curated
tRNA adenylyltransferase (EC:2.7.7.72); K07558 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] id=24624164 bin=Haloquadratum_J07HQX50 species=Haloquadratum sp. J07HQX50 genus=Haloquadratum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Haloquadratum_J07HQX50
CCA-adding enzyme (EC:2.7.7.72)
13_1_40cm_3_scaffold_327_15

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12169..12939
DNA (771bp) protein (257aa)
Ser/Thr protein kinase n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BF72_9ARCH
Marine sediment metagenome DNA, contig: S01H1_L00574 {ECO:0000313|EMBL:GAF84883.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Ser/Thr protein kinase
13_1_40cm_3_scaffold_327_16
uncultured Candidatus Nitrosocaldus sp., Candidatus Nitrosocaldus, Crenarchaeota, Archaea

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comp(12948..13778)
DNA (831bp) protein (277aa)
ABC transporter permease protein n=1 Tax=uncultured Candidatus Nitrosocaldus sp. RepID=Q1ER87_9CREN
ABC transporter permease protein {ECO:0000313|EMBL:BAE95239.1}; TaxID=766501 species="Archaea; Crenarchaeota; Candidatus Nitrosocaldus; environmental samples.;" source="uncultured Candidatus Nitrosoca
ABC transporter permease
13_1_40cm_3_scaffold_327_17
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

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comp(13790..14611)
DNA (822bp) protein (274aa)
ABC transporter n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=Q4LED5_9ARCH
ABC-2 type transport system protein
ABC transporter {ECO:0000313|EMBL:BAE03288.1}; ABC-2 type transport system protein {ECO:0000313|EMBL:BAJ51581.1}; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus
13_1_40cm_3_scaffold_327_18
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

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comp(14598..15674)
DNA (1077bp) protein (359aa)
Antibiotic transport system ATP-binding protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SQX0_9BACT
Antibiotic transport system ATP-binding protein {ECO:0000313|EMBL:BAL58487.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;
putative ABC transporter ATP-binding protein
13_1_40cm_3_scaffold_327_19
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(15756..18620)
DNA (2865bp) protein (955aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=RBG_13_Bathyarchaeota_46_16b_curated
ATP-dependent helicase n=1 Tax=uncultured archaeon GZfos24D9 RepID=Q64C96_9ARCH
DEAD/DEAH box helicase
13_1_40cm_3_scaffold_327_20
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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18712..19014
DNA (303bp) protein (101aa)
PadR family transcriptional regulator Tax=RBG_13_Bathyarchaeota_38_9_curated
13_1_40cm_3_scaffold_327_21
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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19030..19725
DNA (696bp) protein (232aa)
sipW; signal peptidase I (EC:3.4.21.89); K13280 signal peptidase, endoplasmic reticulum-type [EC:3.4.-.-] Tax=RBG_13_Bathyarchaeota_38_9_curated
13_1_40cm_3_scaffold_327_22
Vulcanisaeta distributa, Vulcanisaeta, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

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19899..20381
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QSB6_VULDI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADN49509.1}; TaxID=572478 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Vulcanisaeta.;" source="Vulcanisaeta distributa (s
13_1_40cm_3_scaffold_327_23
unknown

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comp(20674..21027)
DNA (354bp) protein (118aa)

This feature has no annotations

13_1_40cm_3_scaffold_327_24
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(21796..22377)
DNA (582bp) protein (194aa)
putative N-acetyltransferase id=1245772 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
putative N-acetyltransferase Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
hypothetical protein
13_1_40cm_3_scaffold_327_25
CG_Caldi_01, Caldisericum, Caldisericales, Caldisericia, Caldiserica, Bacteria

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comp(22415..23371)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6TQZ8_9EURY
nitrogenase subunit NifH (ATPase)-like protein Tax=CG_Caldi_01
nitrogenase subunit NifH (ATPase)-like protein
13_1_40cm_3_scaffold_327_26
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(23489..24181)
DNA (693bp) protein (231aa)
hypothetical protein Tax=RBG_13_Deltaproteobacteria_65_10_curated
hypothetical protein id=24577506 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
13_1_40cm_3_scaffold_327_27
unknown

Not on your lists

24373..24597
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_40cm_3_scaffold_327_28
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(24594..25757)
DNA (1164bp) protein (388aa)
Tetracycline efflux transporter n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P7J5_9BACT
tetA; tetracycline efflux transporter
Tetracycline efflux transporter {ECO:0000313|EMBL:CBK43341.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_3_scaffold_327_29
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

Not on your lists

27352..27783
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N2Q2_9ARCH
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ46608.1}; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarchaeum
13_1_40cm_3_scaffold_327_30
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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27828..28355
DNA (528bp) protein (176aa)
transcriptional regulator, MarR family
transcriptional regulator, MarR family id=5240652 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=RBG_16_Thaumarchaeota_49_8_curated
Displaying 30 items

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