ggKbase home page

13_1_40cm_3_scaffold_416

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_416_1
unknown

Not on your lists

1..696
DNA (696bp) protein (232aa)

This feature has no annotations

13_1_40cm_3_scaffold_416_2
unknown

Not on your lists

745..1188
DNA (444bp) protein (148aa)

This feature has no annotations

13_1_40cm_3_scaffold_416_3
unknown

Not on your lists

1878..2090
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_40cm_3_scaffold_416_4
unknown

Not on your lists

comp(2698..2835)
DNA (138bp) protein (46aa)

This feature has no annotations

13_1_40cm_3_scaffold_416_5
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

3141..3728
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI0003643B83
Strain A contig00006, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ55671.1}; TaxID=277 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiotherm
hypothetical protein
13_1_40cm_3_scaffold_416_6
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

4024..4500
DNA (477bp) protein (159aa)
Putative HEAT repeat-containing PBS lyase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKC1_NITGG
HEAT repeat-containing PBS lyase Tax=RBG_16_Archaea_50_20_curated
HEAT repeat-containing PBS lyase
13_1_40cm_3_scaffold_416_7
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

4514..5620
DNA (1107bp) protein (369aa)
hypothetical protein; K15429 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Met-10+ like protein n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AF65_PYRYC
hypothetical protein
13_1_40cm_3_scaffold_416_8
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(5617..6036)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GY02_METFV
hypothetical protein
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
13_1_40cm_3_scaffold_416_9

Not on your lists

6339..6794
DNA (456bp) protein (152aa)
protein-l-isoaspartate o-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GXH4_METFV
Marine sediment metagenome DNA, contig: S01H4_S06085 {ECO:0000313|EMBL:GAG97573.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
13_1_40cm_3_scaffold_416_10
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(6791..7828)
DNA (1038bp) protein (346aa)
flap endonuclease-1; K04799 flap endonuclease-1 [EC:3.-.-.-] Tax=RBG_16_Archaea_50_20_curated
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI00037087F5 rbh
endonuclease
13_1_40cm_3_scaffold_416_11
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(7858..8553)
DNA (696bp) protein (232aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L453_KORCO
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; K06898 Tax=RBG_13_Bathyarchaeota_38_9_curated
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
13_1_40cm_3_scaffold_416_12
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

8687..9556
DNA (870bp) protein (290aa)
Putative uncharacterized protein n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N2T9_ANATU
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ65089.1}; TaxID=926569 species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolinea thermophi
13_1_40cm_3_scaffold_416_13
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

9782..10381
DNA (600bp) protein (200aa)
proteasome subunit beta (EC:3.4.25.1); K03433 proteasome beta subunit [EC:3.4.25.1] Tax=RBG_16_Archaea_50_20_curated
psmB2; proteasome, subunit beta (EC:3.4.25.1)
Proteasome subunit beta n=1 Tax=Methanothermobacter thermautotrophicus CaT2 RepID=T2GKZ6_METTF
13_1_40cm_3_scaffold_416_14
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

10484..12346
DNA (1863bp) protein (621aa)
Putative uncharacterized protein PH1404 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O50112_PYRHO
kh-domain/beta-lactamase-domain protein; K07041 Tax=RBG_13_Bathyarchaeota_38_9_curated
mRNA 3'-end processing factor
13_1_40cm_3_scaffold_416_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(12359..12685)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=uncultured archaeon RepID=G3C9I1_9ARCH
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
Protein of unknown function (DUF552)
13_1_40cm_3_scaffold_416_16
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(12780..13283)
DNA (504bp) protein (168aa)
Putative RNA-binding protein n=2 Tax=Methanococcus maripaludis RepID=G0H0Y3_METMI
putative RNA-binding protein; K07575 PUA domain protein Tax=RBG_16_Archaea_50_20_curated
RNA-binding protein
13_1_40cm_3_scaffold_416_17
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

13366..13596
DNA (231bp) protein (77aa)
Small nuclear ribonucleoprotein n=1 Tax=Cenarchaeum symbiosum (strain A) RepID=A0RZA4_CENSY
small nuclear ribonucleoprotein Tax=RBG_13_Bathyarchaeota_38_9_curated
small nuclear ribonucleoprotein
13_1_40cm_3_scaffold_416_18
unknown

Not on your lists

14150..14635
DNA (486bp) protein (162aa)

This feature has no annotations

13_1_40cm_3_scaffold_416_19
unknown

Not on your lists

14637..16478
DNA (1842bp) protein (614aa)

This feature has no annotations

13_1_40cm_3_scaffold_416_20
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


16817..18544
DNA (1728bp) protein (576aa)
glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14] Tax=RBG_16_Archaea_50_20_curated
Glycine--tRNA ligase n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ECJ1_PYRF1
glycyl-tRNA synthetase
13_1_40cm_3_scaffold_416_21
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

18612..19271
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8B5_9ARCH
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_3_scaffold_416_22
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

19279..19848
DNA (570bp) protein (190aa)
endA1; tRNA-splicing endonuclease (EC:3.1.27.9) Tax=RBG_16_Archaea_50_20_curated
tRNA-intron endonuclease (EC:4.6.1.16)
tRNA intron endonuclease n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KJR1_9ARCH
13_1_40cm_3_scaffold_416_23
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(19858..20193)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI000380515C
hypothetical protein
Tax=RBG_16_Thaumarchaeota_49_8_curated
13_1_40cm_3_scaffold_416_24
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

20356..20859
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Methanothermobacter thermautotrophicus CaT2 RepID=T2GJY7_METTF
amino acid-binding ACT domain-containing protein; K07103 Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein
13_1_40cm_3_scaffold_416_25
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

20941..21693
DNA (753bp) protein (251aa)
Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_3_scaffold_416_26
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

21694..22281
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Aigarchaeota archaeon SCGC AAA471-G05 RepID=UPI00037F1D50
hsp20; heat shock protein Hsp20 Tax=RBG_13_Bathyarchaeota_38_9_curated
hsp20-4; heat shock protein Hsp20
13_1_40cm_3_scaffold_416_27
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

Not on your lists

22426..23628
DNA (1203bp) protein (401aa)
Peptidase M24 n=1 Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QPW0_VULDI
peptidase M24 Tax=RBG_13_Bathyarchaeota_52_12_curated
peptidase M24
13_1_40cm_3_scaffold_416_28
unknown

Not on your lists

comp(24076..24267)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_3_scaffold_416_29
RBG_13_Lokiarchaeota_45_8_curated, Lokiarchaeota, Archaea

Not on your lists

comp(24352..25512)
DNA (1161bp) protein (387aa)
acyl-CoA dehydrogenase domain-containing protein; K00257 [EC:1.3.99.-] Tax=RBG_13_Lokiarchaeota_45_8_curated
acyl-CoA dehydrogenase n=1 Tax=Lentibacillus jeotgali RepID=UPI00026287F1
acyl-CoA dehydrogenase
13_1_40cm_3_scaffold_416_30
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(25568..27151)
DNA (1584bp) protein (528aa)
UPF0219 protein Mfer_0083 n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWZ8_METFV
hydroxymethylglutaryl-CoA synthase Tax=RBG_13_Bathyarchaeota_38_9_curated
hydroxymethylglutaryl-CoA synthase
Displaying items 1-30 of 44 in total

View Taxonomy