ggKbase home page

13_1_40cm_3_scaffold_246

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_246_1
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

2..1165
DNA (1164bp) protein (388aa)
elongation factor EF-2 (EC:3.6.5.3)
Elongation factor 2 n=2 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Y0_9ARCH
fusA; elongation factor 2 Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_3_scaffold_246_2
unknown

Not on your lists

comp(1195..1425)
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_40cm_3_scaffold_246_3
unknown

Not on your lists

comp(1988..2239)
DNA (252bp) protein (84aa)

This feature has no annotations

13_1_40cm_3_scaffold_246_trna_1
unknown

Not on your lists

3189..3267
DNA (79bp)
transferRNA
13_1_40cm_3_scaffold_246_4
Thermoplasmatales archaeon A-plasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(3349..4365)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon A-plasma RepID=T0N732_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EQB71126.1}; TaxID=667135 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; environmental samples.;" source="Thermoplasmatales archaeon A-pl
13_1_40cm_3_scaffold_246_5
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(4461..5672)
DNA (1212bp) protein (404aa)
cystathionine gamma-synthase (EC:2.5.1.48); K01739 cystathionine gamma-synthase [EC:2.5.1.48] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
cystathionine gamma-synthase (EC:2.5.1.48)
Cystathionine beta-lyase MetC n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SPC9_9CHLR
13_1_40cm_3_scaffold_246_6
unknown

Not on your lists

5850..6092
DNA (243bp) protein (81aa)

This feature has no annotations

13_1_40cm_3_scaffold_246_7
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6318..6983
DNA (666bp) protein (222aa)
KaiC domain-containing protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12V49_METBU
RecA-superfamily ATPase possibly involved in signal transduction {ECO:0000313|EMBL:KGK98946.1}; TaxID=2226 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Meth
hypothetical protein
13_1_40cm_3_scaffold_246_8
unknown

Not on your lists

6973..7692
DNA (720bp) protein (240aa)

This feature has no annotations

13_1_40cm_3_scaffold_246_9
unknown

Not on your lists

comp(7701..8486)
DNA (786bp) protein (262aa)

This feature has no annotations

13_1_40cm_3_scaffold_246_10
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(8483..9265)
DNA (783bp) protein (261aa)
Hypothetical conserved protein n=1 Tax=uncultured crenarchaeote RepID=H5SJ42_9CREN
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
putative circadian clock protein, KaiC
13_1_40cm_3_scaffold_246_11
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(9440..9838)
DNA (399bp) protein (133aa)
Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_3_scaffold_246_12
Sulfolobales archaeon AZ1, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(9880..12363)
DNA (2484bp) protein (828aa)
Probable aminopeptidase 2 n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=APE2_SULTO rbh
Peptidase M1 membrane alanine aminopeptidase {ECO:0000313|EMBL:EWG07574.1}; TaxID=1326980 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; unclassified Sulfolobales.;" source="Sulfolobales
aminopeptidase
13_1_40cm_3_scaffold_246_13
unknown

Not on your lists

comp(12317..12580)
DNA (264bp) protein (88aa)

This feature has no annotations

13_1_40cm_3_scaffold_246_14
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

12822..13421
DNA (600bp) protein (200aa)
ERCC4 domain-containing protein; K10848 DNA excision repair protein ERCC-4 [EC:3.1.-.-] Tax=RBG_13_Bathyarchaeota_38_9_curated
Repair endonuclease XPF n=1 Tax=Acidilobus saccharovorans (strain DSM 16705 / VKM B-2471 / 345-15) RepID=D9Q0F5_ACIS3
Repair endonuclease XPF
13_1_40cm_3_scaffold_246_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

13427..14731
DNA (1305bp) protein (435aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase (EC:3.5.4.28); K12960 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] Tax=RBG_16_Archaea_50_20_curated
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D7Q3_METSW
N-ethylammeline chlorohydrolase
13_1_40cm_3_scaffold_246_16
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14708..15397)
DNA (690bp) protein (230aa)
Universal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D3S3_METSW
universal metal-binding-domain/4Fe-4S-binding-domain-containing ABC transporter protein
Universal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter protein {ECO:0000313|EMBL:AEG18067.1}; TaxID=868131 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales
13_1_40cm_3_scaffold_246_17
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(15394..17013)
DNA (1620bp) protein (540aa)
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
Probable DNA ligase id=1884939 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_246_18
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

Not on your lists

comp(17001..18029)
DNA (1029bp) protein (343aa)
Flap endonuclease 1 n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RXA5_THEPD
flap structure-specific endonuclease Tax=RBG_13_Bathyarchaeota_52_12_curated
flap endonuclease-1
13_1_40cm_3_scaffold_246_19
unknown

Not on your lists

comp(18813..19016)
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_40cm_3_scaffold_246_20
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(19448..20224)
DNA (777bp) protein (259aa)
Cobalt/nickel ABC transporter permease n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Z5_9ARCH
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
cobalt/nickel ABC transporter permease
13_1_40cm_3_scaffold_246_21
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(20205..21047)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Thermofilum sp. 1910b RepID=S5ZL53_9CREN
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
hypothetical protein
13_1_40cm_3_scaffold_246_22
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(21044..21910)
DNA (867bp) protein (289aa)
Cobalt/nickel ABC transporter ATP-binding protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Z3_9ARCH
ABC transporter; K02006 cobalt/nickel transport system ATP-binding protein Tax=RBG_13_Bathyarchaeota_38_9_curated
cobalt/nickel ABC transporter ATP-binding protein
13_1_40cm_3_scaffold_246_23
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(21969..22847)
DNA (879bp) protein (293aa)
Predicted phosphoesterase, DHH family n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BKC6_HYPBU
DHH family phosphoesterase; K06881 phosphoesterase RecJ domain-containing protein Tax=RBG_16_Archaea_50_20_curated
DHH family phosphoesterase
13_1_40cm_3_scaffold_246_24
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(23009..23374)
DNA (366bp) protein (122aa)
pfdB; prefoldin, subunit beta Tax=RBG_16_Archaea_50_20_curated
prefoldin, chaperonin cofactor; K04798 prefoldin beta subunit id=14427074 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
pfdB; prefoldin, subunit beta
13_1_40cm_3_scaffold_246_25
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(23633..24073)
DNA (441bp) protein (147aa)
50S ribosomal protein L37Ae n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AI24_PYRYC
rpl37ae; 50S ribosomal protein L37Ae; K02921 large subunit ribosomal protein L37Ae Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L37Ae
13_1_40cm_3_scaffold_246_26
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(24073..24891)
DNA (819bp) protein (273aa)
Exosome complex component Rrp42 n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AH19_PYRYC
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 Tax=RBG_16_Archaea_50_20_curated
exosome complex RNA-binding protein Rrp42
13_1_40cm_3_scaffold_246_27
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(24891..25658)
DNA (768bp) protein (256aa)
ecx1; putative exosome complex exonuclease (EC:3.1.13.-)
Exosome complex component Rrp41 n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ECM9_PYRF1
rph; exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_3_scaffold_246_28
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(25636..26349)
DNA (714bp) protein (238aa)
Exosome complex component Rrp4 n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ECM8_PYRF1
KH domain containing protein; K03679 exosome complex component RRP4 Tax=RBG_16_Archaea_50_20_curated
KH domain containing protein
13_1_40cm_3_scaffold_246_29
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(26365..27054)
DNA (690bp) protein (230aa)
Putative ribosome maturation protein SDO1 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJH0_NITGG
ribosome maturation protein SDO1 Tax=RBG_16_Archaea_50_20_curated
ribosome maturation protein SDO1
Displaying items 1-30 of 43 in total

View Taxonomy