ggKbase home page

13_1_40cm_3_scaffold_993

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_993_1
Candidatus Korarchaeum cryptofilum, Candidatus Korarchaeum, Korarchaeota, Archaea

Not on your lists

2..1024
-----------------
DNA (1023bp)
protein (341aa)
ABC-type branched-chain amino acid transport system, permease component n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L7L9_KORCO
branched-chain amino acid ABC transporter permease
ABC-type branched-chain amino acid transport system, permease component {ECO:0000313|EMBL:ACB06846.1}; TaxID=374847 species="Archaea; Korarchaeota; Candidatus Korarchaeum.;" source="Korarchaeum crypto
13_1_40cm_3_scaffold_993_2
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(1096..1353)
-----------------
DNA (258bp)
protein (86aa)
Uncharacterized protein family UPF0434/Trm112 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICD1_NITGG
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
uncharacterized protein family UPF0434/Trm112
13_1_40cm_3_scaffold_993_3
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(1497..2162)
-----------------
DNA (666bp)
protein (222aa)
hypothetical protein n=1 Tax=crenarchaeote SCGC AAA261-L14 RepID=UPI000362A8E6
dehydrogenase Tax=RBG_16_Bathyarchaeota_48_13_curated
oxidoreductase domain-containing protein
13_1_40cm_3_scaffold_993_4
unknown

Not on your lists

comp(2137..3699)
-----------------
DNA (1563bp)
protein (521aa)

This feature has no annotations

13_1_40cm_3_scaffold_993_5
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

3953..4984
-----------------
DNA (1032bp)
protein (344aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJF7_NITGG
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
hypothetical protein
13_1_40cm_3_scaffold_993_6
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(5430..6737)
-----------------
DNA (1308bp)
protein (436aa)
pgm-1; alpha-phosphoglucomutase / phosphomannomutase (EC:5.4.2.8 5.4.2.2); K15778 phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] Tax=RBG_13_Bathyarchaeota_38_9_curated
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphomannomutase n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TA45_9ARCH
13_1_40cm_3_scaffold_993_7
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(6814..7749)
-----------------
DNA (936bp)
protein (312aa)
Gcd1.2; nucleoside-diphosphate-sugar pyrophosphorylase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K01840 phosphomannomutase [EC:5.4.2.8] Tax=RBG_16_Archaea_50_20_curated
Nucleotidyl transferase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVJ3_RUBXD
nucleotidyl transferase
13_1_40cm_3_scaffold_993_8
unknown

Not on your lists

7950..8594
-----------------
DNA (645bp)
protein (215aa)

This feature has no annotations

13_1_40cm_3_scaffold_993_9
Sulfolobales archaeon AZ1, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(8661..9308)
-----------------
DNA (648bp)
protein (216aa)
Uncharacterized protein {ECO:0000313|EMBL:KJR78002.1}; Flags: Fragment;; TaxID=1326980 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; unclassified Sulfolobales.;" source="Sulfolobales ar
13_1_40cm_3_scaffold_993_10
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

9825..10562
-----------------
DNA (738bp)
protein (246aa)
Putative GHMP kinase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGS5_NITGG
GHMP kinase Tax=RBG_13_Bathyarchaeota_46_16b_curated
GHMP kinase
13_1_40cm_3_scaffold_993_11
Vulcanisaeta moutnovskia, Vulcanisaeta, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

10694..11317
-----------------
DNA (624bp)
protein (208aa)
pantothenate synthetase (EC:6.3.2.1)
Uncharacterized protein n=1 Tax=Vulcanisaeta moutnovskia (strain 768-28) RepID=F0QVV5_VULM7
Uncharacterized protein {ECO:0000313|EMBL:ADY02129.1}; TaxID=985053 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Vulcanisaeta.;" source="Vulcanisaeta moutnovskia (
13_1_40cm_3_scaffold_993_12
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11302..12183
-----------------
DNA (882bp)
protein (294aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] Tax=RBG_16_Deltaproteobacteria_50_11_curated
ketopantoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J0V6_DESRM
13_1_40cm_3_scaffold_993_13
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12188..13111
-----------------
DNA (924bp)
protein (308aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169] Tax=RBG_13_Deltaproteobacteria_61_14_curated
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase n=1 Tax=Jonquetella sp. BV3C21 RepID=U2UZU2_9BACT
13_1_40cm_3_scaffold_993_14
Thermofilum pendens, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(13239..13499)
-----------------
DNA (261bp)
protein (87aa)
Uncharacterized protein n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RX12_THEPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL77742.1}; TaxID=368408 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum.;" source="Thermofilum pendens (strain H
13_1_40cm_3_scaffold_993_15
R_OD1_Giovannonibacteria_45_23, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

13852..14640
-----------------
DNA (789bp)
protein (263aa)
Nucleotidyl transferase n=1 Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QSY6_VULDI
nucleotidyl transferase Tax=RIFCSPHIGHO2_01_FULL_OD1_Giovannonibacteria_45_23_curated
nucleotidyl transferase
13_1_40cm_3_scaffold_993_16
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists

14624..15526
-----------------
DNA (903bp)
protein (301aa)
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=CG_Pacearch_01
NDP-sugar dehydratase or epimerase n=1 Tax=Thermococcus zilligii RepID=UPI00029AF717
NAD dependent epimerase/dehydratase
13_1_40cm_3_scaffold_993_17
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(15753..16061)
-----------------
DNA (309bp)
protein (103aa)
Protein translation factor SUI1 homolog n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N3C4_9ARCH
translation initiation factor aSUI1 Tax=RBG_13_Bathyarchaeota_38_9_curated
translation initiation factor SUI1
13_1_40cm_3_scaffold_993_18
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(16720..17457)
-----------------
DNA (738bp)
protein (246aa)
Transcription initiation factor IIB n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U4W7_9ARCH
transcription factor TFIIB cyclin-related protein; K03124 transcription initiation factor TFIIB Tax=RBG_13_Bathyarchaeota_38_9_curated
Transcription initiation factor IIB (TFIIB)
13_1_40cm_3_scaffold_993_trna_1
unknown

Not on your lists

17793..17928
-----------------
DNA (136bp)
transferRNA
13_1_40cm_3_scaffold_993_19
unknown

Not on your lists

comp(17992..18489)
-----------------
DNA (498bp)
protein (166aa)

This feature has no annotations

13_1_40cm_3_scaffold_993_20
RBG_16_Bathyarchaeota_57_9_curated, Bathyarchaeota, Archaea

Not on your lists

18698..19213
-----------------
DNA (516bp)
protein (172aa)
cytidyltransferase (EC:2.7.7.3) Tax=RBG_16_Bathyarchaeota_57_9_curated
cytidyltransferase (EC:2.7.7.3)
Cytidyltransferase-related domain protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWL3_METFV
13_1_40cm_3_scaffold_993_21
unknown

Not on your lists

comp(19239..19622)
-----------------
DNA (384bp)
protein (128aa)

This feature has no annotations

13_1_40cm_3_scaffold_993_22
unknown

Not on your lists

comp(19846..20475)
-----------------
DNA (630bp)
protein (210aa)

This feature has no annotations

13_1_40cm_3_scaffold_993_23
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(20917..21351)
-----------------
DNA (435bp)
protein (145aa)
Uncharacterized protein n=1 Tax=Staphylothermus hellenicus (strain DSM 12710 / JCM 10830 / BK20S6-10-b1 / P8) RepID=D7D9Y0_STAHD
Marine sediment metagenome DNA, contig: S06H3_L03387 Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein
13_1_40cm_3_scaffold_993_24
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(21395..21652)
-----------------
DNA (258bp)
protein (86aa)
Tax=RBG_16_Bathyarchaeota_48_13_curated
13_1_40cm_3_scaffold_993_25

Not on your lists

21817..22269
-----------------
DNA (453bp)
protein (151aa)
hypothetical protein n=1 Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI000364DC1E
Metal dependent phosphohydrolase {ECO:0000313|EMBL:AIF05440.1}; TaxID=1456067 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_182_G12.;"
Metal dependent phosphohydrolase
13_1_40cm_3_scaffold_993_26
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(22266..22802)
-----------------
DNA (537bp)
protein (179aa)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI0003727633
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
Displaying 27 items

View Taxonomy