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13_1_40cm_3_scaffold_1037

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1037_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

761..1630
DNA (870bp) protein (290aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB3_9BACT
13_1_40cm_3_scaffold_1037_2
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

1627..2712
DNA (1086bp) protein (362aa)
rpe; d-ribulose-5-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
rpe; d-ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB5_9BACT rbh
13_1_40cm_3_scaffold_1037_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


2719..4293
DNA (1575bp) protein (525aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB6_9BACT rbh
13_1_40cm_3_scaffold_1037_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


4371..6086
DNA (1716bp) protein (572aa)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanyl-tRNA synthetase, beta subunit n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB7_9BACT rbh
13_1_40cm_3_scaffold_1037_5
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


comp(6164..6526)
DNA (363bp) protein (121aa)
50S ribosomal protein L20 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB8_9BACT
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus
13_1_40cm_3_scaffold_1037_6
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists


comp(6610..6813)
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB9_9BACT
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
rpmI; 50S ribosomal protein L35
13_1_40cm_3_scaffold_1037_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(6846..7262)
DNA (417bp) protein (139aa)
Translation initiation factor IF-3 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC0_9BACT
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
infC; translation initiation factor IF-3
13_1_40cm_3_scaffold_1037_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(7376..9313)
DNA (1938bp) protein (646aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC1_9BACT rbh
13_1_40cm_3_scaffold_1037_trna_1
unknown

Not on your lists

comp(9744..9815)
DNA (72bp)
transferRNA
13_1_40cm_3_scaffold_1037_9
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(9953..10225)
DNA (273bp) protein (91aa)
Transcriptional dual regulator HU-alpha n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC2_9BACT
hupA; transcriptional dual regulator HU-alpha; K03530 DNA-binding protein HU-beta Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
hupA; transcriptional dual regulator HU-alpha
13_1_40cm_3_scaffold_1037_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(10373..10999)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC3_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_3_scaffold_1037_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

11501..11953
DNA (453bp) protein (151aa)
Putative HTH-type transcriptional regulator, rrf2 family n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC4_9BACT
putative HTH-type transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative HTH-type transcriptional regulator
13_1_40cm_3_scaffold_1037_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

12062..13258
DNA (1197bp) protein (399aa)
putative sulfite reductase, contains SirA-like domain (EC:1.8.7.1); K00381 sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative sulfite reductase, contains SirA-like domain (EC:1.8.7.1)
Putative Sulfite reductase, contains SirA-like domain (Modular protein) n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC5_9BACT
Displaying 13 items

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