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13_1_40cm_3_scaffold_2594

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2594_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


98..451
DNA (354bp) protein (118aa)
50S ribosomal protein L22 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCV7_9BACT
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rplV; 50S ribosomal protein L22
13_1_40cm_3_scaffold_2594_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


490..1155
DNA (666bp) protein (222aa)
30S ribosomal protein S3 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCV8_9BACT
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpsC; 30S ribosomal protein S3
13_1_40cm_3_scaffold_2594_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


1295..1753
DNA (459bp) protein (153aa)
50S ribosomal protein L16 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCV9_9BACT
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rplP; 50S ribosomal protein L16
13_1_40cm_3_scaffold_2594_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


1768..1995
DNA (228bp) protein (76aa)
50S ribosomal protein L29 n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QDQ7_9FIRM
rpmC; 50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
50S ribosomal protein L29
13_1_40cm_3_scaffold_2594_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


1995..2261
DNA (267bp) protein (89aa)
30S ribosomal protein S17 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCW1_9BACT
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpsQ; 30S ribosomal protein S17
13_1_40cm_3_scaffold_2594_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


2348..2716
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCW2_9BACT
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rplN; 50S ribosomal protein L14
13_1_40cm_3_scaffold_2594_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


2735..3073
DNA (339bp) protein (113aa)
50S ribosomal protein L24 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCW3_9BACT
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rplX; 50S ribosomal protein L24
13_1_40cm_3_scaffold_2594_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


3085..3747
DNA (663bp) protein (221aa)
50S ribosomal protein L5 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCW4_9BACT rbh
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rplE; 50S ribosomal protein L5
13_1_40cm_3_scaffold_2594_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


4101..4496
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCW6_9BACT
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpsH; 30S ribosomal protein S8
13_1_40cm_3_scaffold_2594_10
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


4718..5254
DNA (537bp) protein (179aa)
50S ribosomal protein L6 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCW7_9BACT
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus
13_1_40cm_3_scaffold_2594_11
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists


5264..5620
DNA (357bp) protein (119aa)
50S ribosomal protein L18 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCW8_9BACT
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
rplR; 50S ribosomal protein L18
13_1_40cm_3_scaffold_2594_12
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


5596..6090
DNA (495bp) protein (165aa)
30S ribosomal protein S5 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCW9_9BACT
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus
13_1_40cm_3_scaffold_2594_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


6090..6293
DNA (204bp) protein (68aa)
50S ribosomal protein L30 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX0_9BACT
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpmD; 50S ribosomal protein L30
13_1_40cm_3_scaffold_2594_14
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


6290..6739
DNA (450bp) protein (150aa)
50S ribosomal protein L15 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX1_9BACT
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rplO; 50S ribosomal protein L15
13_1_40cm_3_scaffold_2594_15
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


6732..8045
DNA (1314bp) protein (438aa)
Protein translocase subunit SecY n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX2_9BACT rbh
secY; preprotein translocase, membrane subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
secY; preprotein translocase, membrane subunit SecY
13_1_40cm_3_scaffold_2594_16
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

8054..8710
DNA (657bp) protein (219aa)
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX3_9BACT
13_1_40cm_3_scaffold_2594_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

8707..9459
DNA (753bp) protein (251aa)
map; methionyl aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
map; methionyl aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX4_9BACT
13_1_40cm_3_scaffold_2594_18
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

9490..9708
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX5_9BACT
translation initiation factor 1; K02518 translation initiation factor IF-1 Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
infA; translation initiation factor IF-1
13_1_40cm_3_scaffold_2594_19
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


10070..10468
DNA (399bp) protein (133aa)
30S ribosomal protein S13 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX7_9BACT
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315, ECO:0000313|EMBL:CBK41086.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus N
13_1_40cm_3_scaffold_2594_20
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


10500..10883
DNA (384bp) protein (128aa)
30S ribosomal protein S11 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX8_9BACT
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpsK; 30S ribosomal protein S11
13_1_40cm_3_scaffold_2594_21
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


10977..11603
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX9_9BACT
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpsD; 30S ribosomal protein S4
13_1_40cm_3_scaffold_2594_22
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

11688..12692
DNA (1005bp) protein (335aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY0_9BACT rbh
13_1_40cm_3_scaffold_2594_23
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


12706..13182
DNA (477bp) protein (159aa)
50S ribosomal protein L17 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY1_9BACT
rplQ; 50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus
13_1_40cm_3_scaffold_2594_24
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

13368..13934
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY2_9BACT
hypothetical protein; K11719 lipopolysaccharide export system protein LptC Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_3_scaffold_2594_25
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

13909..14520
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY3_9BACT
hypothetical protein; K09774 lipopolysaccharide export system protein LptA Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_3_scaffold_2594_26
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

14530..15309
DNA (780bp) protein (260aa)
lptB; putative lipopolysaccharide ABC transporter ATPase (EC:3.6.3.-); K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
lptB; putative lipopolysaccharide ABC transporter ATPase (EC:3.6.3.-)
ABC-type transport system, ATPase component, putative lipopolysaccharide transport system n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY4_9BACT rbh
13_1_40cm_3_scaffold_2594_27
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

15337..16845
DNA (1509bp) protein (503aa)
RNA polymerase, sigma-54 (Sigma N) factor n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY5_9BACT rbh
rpoN; RNA polymerase, sigma-54 (sigma N) factor; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpoN; RNA polymerase, sigma-54 (sigma N) factor
13_1_40cm_3_scaffold_2594_28
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

17079..17945
DNA (867bp) protein (289aa)
UPF0042 nucleotide-binding protein yhbJ n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY7_9BACT
yhbJ; hypothetical protein; K06958 UPF0042 nucleotide-binding protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
yhbJ; hypothetical protein
13_1_40cm_3_scaffold_2594_29
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

18315..18704
DNA (390bp) protein (130aa)
Type IV pilus biogenesis protein PilM n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY9_9BACT
pilM; type IV pilus biogenesis protein PilM; K02662 type IV pilus assembly protein PilM Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
pilM; type IV pilus biogenesis protein PilM
13_1_40cm_3_scaffold_2594_30
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

18658..19374
DNA (717bp) protein (239aa)
Type IV pilus biogenesis protein PilM n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY9_9BACT
pilM; type IV pilus biogenesis protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pilM; type IV pilus biogenesis protein PilM
Displaying items 1-30 of 36 in total

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