ggKbase home page

13_1_40cm_3_scaffold_6118

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_6118_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1..399)
DNA (399bp) protein (133aa)
NHL repeat containing protein, partial n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AD41
hypothetical protein
NHL repeat-containing protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
13_1_40cm_3_scaffold_6118_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(402..1478)
DNA (1077bp) protein (359aa)
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC07_9BACT rbh
13_1_40cm_3_scaffold_6118_3
RBG_16_Nitrospirae_43_11_curated, Nitrospirae, Bacteria

Not on your lists

comp(1491..2051)
DNA (561bp) protein (187aa)
3-isopropylmalate dehydratase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] Tax=RBG_16_Nitrospirae_43_11_curated
3-isopropylmalate dehydratase, small subunit n=1 Tax=Pelodictyon luteolum (strain DSM 273) RepID=Q3B598_PELLD
3-isopropylmalate dehydratase small subunit
13_1_40cm_3_scaffold_6118_4
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(2073..2252)
DNA (180bp) protein (60aa)
hypothetical protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
13_1_40cm_3_scaffold_6118_5
RBG_16_Nitrospirae_43_11_curated, Nitrospirae, Bacteria

Not on your lists

comp(2489..3814)
DNA (1326bp) protein (442aa)
homoaconitate hydratase family protein; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RBG_16_Nitrospirae_43_11_curated
3-isopropylmalate dehydratase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YYX8_9BACT
homoaconitate hydratase family protein
13_1_40cm_3_scaffold_6118_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(3955..5457)
DNA (1503bp) protein (501aa)
leuA; 2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
leuA; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC05_9BACT rbh
13_1_40cm_3_scaffold_6118_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(5904..6692)
DNA (789bp) protein (263aa)
pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase (EC:2.7.8.8); K00998 phosphatidylserine synthase [EC:2.7.8.8] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase (EC:2.7.8.8)
CDP-diacylglycerol-serine O-phosphatidyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC04_9BACT
13_1_40cm_3_scaffold_6118_8
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(6674..7354)
DNA (681bp) protein (227aa)
psd; phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=330214
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC03_9BACT
13_1_40cm_3_scaffold_6118_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(7399..8412)
DNA (1014bp) protein (338aa)
ilvC; Ketol-acid reductoisomerase (EC:1.1.1.86); K00053 ketol-acid reductoisomerase [EC:1.1.1.86] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
ilvC; Ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC02_9BACT
13_1_40cm_3_scaffold_6118_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(8454..8972)
DNA (519bp) protein (173aa)
ilvH; acetolactate synthase small subunit (EC:2.2.1.6); K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
ilvH; acetolactate synthase small subunit (EC:2.2.1.6)
Acetolactate synthase, small subunit n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC01_9BACT
13_1_40cm_3_scaffold_6118_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(9053..10828)
DNA (1776bp) protein (592aa)
ilvI; acetolactate synthase large subunit (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
ilvI; acetolactate synthase large subunit (EC:2.2.1.6)
Acetolactate synthase, large subunit n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC00_9BACT
13_1_40cm_3_scaffold_6118_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

11097..11408
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBZ9_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_3_scaffold_6118_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

11871..12386
DNA (516bp) protein (172aa)
rnhC; ribonuclease HIII (fragment) (EC:3.1.26.4); K03471 ribonuclease HIII [EC:3.1.26.4] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rnhC; ribonuclease HIII (fragment) (EC:3.1.26.4)
Ribonuclease n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBZ5_9BACT
Displaying 13 items

View Taxonomy