ggKbase home page

13_1_40cm_3_scaffold_1580

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1580_1
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(1..2052)
DNA (2052bp) protein (684aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000377C0CF
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_1580_2
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(2093..2716)
DNA (624bp) protein (208aa)
Chromosome segregation and condensation protein, ScpB n=1 Tax=mine drainage metagenome RepID=T1BE45_9ZZZZ
scpB; segregation and condensation protein B; K06024 segregation and condensation protein B Tax=RBG_16_Euryarchaeota_68_12_curated
chromosome segregation and condensation protein ScpB
13_1_40cm_3_scaffold_1580_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(2713..3654)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037998E1
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_1580_4
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(3651..7214)
DNA (3564bp) protein (1188aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035F4B81
chromosome segregation protein SMC Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
chromosome segregation protein SMC
13_1_40cm_3_scaffold_1580_5
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

7498..9840
DNA (2343bp) protein (781aa)
Laminin G, sub domain 2 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5V013_ROSS1
fibronectin type III domain-containing protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
laminin G, domain-containing 2
13_1_40cm_3_scaffold_1580_6
Thermofilum pendens, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(9926..10693)
DNA (768bp) protein (256aa)
Methyltransferase FkbM family n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1S0Y1_THEPD
FkbM family methyltransferase
Methyltransferase FkbM family {ECO:0000313|EMBL:ABL79111.1}; TaxID=368408 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum.;" source="Thermofilum pendens (st
13_1_40cm_3_scaffold_1580_7
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

10945..11910
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000372D321
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_40cm_3_scaffold_1580_8
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(11889..12341)
DNA (453bp) protein (151aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_40cm_3_scaffold_1580_9
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12513..13478
DNA (966bp) protein (322aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=867904 species="Archae
GDP-mannose 4,6-dehydratase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZN4_METHD
GDP-mannose 4,6-dehydratase
13_1_40cm_3_scaffold_1580_10
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(13498..14424)
DNA (927bp) protein (309aa)
putative glycosyltransferase (EC:2.4.-.-); K07011 Tax=RBG_16_Chloroflexi_57_11_curated
Glycosyl transferase family 2 n=2 Tax=Chloroflexus RepID=A9WBY6_CHLAA
glycosyl transferase family protein
13_1_40cm_3_scaffold_1580_11

Not on your lists

comp(14424..15458)
DNA (1035bp) protein (345aa)
SAM-dependent methyltransferase n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3DZK5_METI4
Uncharacterized protein {ECO:0000313|EMBL:KKM94506.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
smtA; SAM-dependent methyltransferase
13_1_40cm_3_scaffold_1580_12
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(15504..16577)
DNA (1074bp) protein (358aa)
rfbA; glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] Tax=RBG_16_Euryarchaeota_67_27_curated
glucose-1-phosphate thymidyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidyltransferase n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D556_METSW
13_1_40cm_3_scaffold_1580_13
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(16574..17434)
DNA (861bp) protein (287aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133); K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase n=1 Tax=halophilic archaeon DL31 RepID=G2MQ68_9ARCH
13_1_40cm_3_scaffold_1580_14
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

17517..18569
DNA (1053bp) protein (351aa)
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46); K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI00036C78CE
dTDP-glucose 4,6-dehydratase
13_1_40cm_3_scaffold_1580_15
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

18626..19081
DNA (456bp) protein (152aa)
Spore coat polysaccharide biosynthesis protein spsL n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML12_9BACT
spsL; Spore coat polysaccharide biosynthesis protein spsL Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
spsL; Spore coat polysaccharide biosynthesis protein spsL
13_1_40cm_3_scaffold_1580_16
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(19068..20006)
DNA (939bp) protein (313aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Nucleoside-diphosphate-sugar epimerases (EC:5.1.3.2)
UDP-glucose 4-epimerase id=3055757 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
13_1_40cm_3_scaffold_1580_17
unknown

Not on your lists

comp(20047..20436)
DNA (390bp) protein (130aa)

This feature has no annotations

13_1_40cm_3_scaffold_1580_18
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

21075..21404
DNA (330bp) protein (110aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_40cm_3_scaffold_1580_19
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(21414..21938)
DNA (525bp) protein (175aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_40cm_3_scaffold_1580_20
unknown

Not on your lists

22046..22252
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_3_scaffold_1580_21
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

22295..24862
DNA (2568bp) protein (856aa)
peptidase M1 membrane alanine aminopeptidase; K01256 aminopeptidase N [EC:3.4.11.2] Tax=RBG_16_Euryarchaeota_68_13_curated
Membrane alanyl aminopeptidase n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LFJ3_9BACT
aminopeptidase N
13_1_40cm_3_scaffold_1580_22
unknown

Not on your lists

24984..25421
DNA (438bp) protein (146aa)

This feature has no annotations

13_1_40cm_3_scaffold_1580_23
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(25818..26465)
DNA (648bp) protein (216aa)
Dinucleotide-binding protein n=1 Tax=Haloferax gibbonsii ATCC 33959 RepID=M0HJH7_9EURY
NADP oxidoreductase, coenzyme F420-dependent; K06988 Tax=RBG_16_Euryarchaeota_68_12_curated
putative NADP oxidoreductase, coenzyme F420-dependent
13_1_40cm_3_scaffold_1580_24
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

26591..26926
DNA (336bp) protein (112aa)
Protein secretion chaperonin CsaA n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AQ31_9CLOT
export-related chaperone CsaA; K06878 tRNA-binding protein Tax=RBG_16_Euryarchaeota_68_12_curated
export-related chaperone CsaA
13_1_40cm_3_scaffold_1580_25
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

26976..27365
DNA (390bp) protein (130aa)
ypeA; Acetyltransferase (EC:2.3.1.-) Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Acetyltransferase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SVQ2_9BACT
acetyltransferase
13_1_40cm_3_scaffold_1580_26
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(27362..28552)
DNA (1191bp) protein (397aa)
glycine C-acetyltransferase (EC:2.3.1.29); K00639 glycine C-acetyltransferase [EC:2.3.1.29] Tax=RBG_16_Euryarchaeota_68_12_curated
2-amino-3-ketobutyrate CoA ligase (EC:2.3.1.29)
7-keto-8-aminopelargonate synthetase-like enzyme n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7T811_9EURY
13_1_40cm_3_scaffold_1580_27
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(28555..29004)
DNA (450bp) protein (150aa)
L-threonine 3-dehydrogenase; K00060 threonine 3-dehydrogenase [EC:1.1.1.103] Tax=RBG_16_Euryarchaeota_68_12_curated
tdh; L-threonine 3-dehydrogenase (EC:1.1.1.103)
L-threonine 3-dehydrogenase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7T9E1_9EURY
13_1_40cm_3_scaffold_1580_28
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(29004..29513)
DNA (510bp) protein (170aa)
L-threonine 3-dehydrogenase; K00060 threonine 3-dehydrogenase [EC:1.1.1.103] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
L-threonine 3-dehydrogenase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7T9E1_9EURY
L-threonine 3-dehydrogenase
13_1_40cm_3_scaffold_1580_29

Not on your lists

comp(29583..30605)
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Paenibacillus sp. A9 RepID=UPI00036E2A26
Uncharacterized protein {ECO:0000313|EMBL:KKN41665.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
peptidase S8/S53 subtilisin kexin sedolisin
13_1_40cm_3_scaffold_1580_30
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(30825..31754)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7TDS5_9EURY
ATP-NAD/AcoX kinase Tax=RBG_16_Euryarchaeota_68_12_curated
ATP-NAD/AcoX kinase
Displaying items 1-30 of 44 in total

View Taxonomy