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13_1_40cm_3_scaffold_3460

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_3460_1
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(3..503)
DNA (501bp) protein (167aa)
Methionine--tRNA ligase n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IEN4_ACIB4
methionyl-tRNA synthetase Tax=RBG_16_Euryarchaeota_68_12_curated
methionyl-tRNA synthetase
13_1_40cm_3_scaffold_3460_2
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(607..1257)
DNA (651bp) protein (217aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_3460_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(1359..2321)
DNA (963bp) protein (321aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_3460_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(2357..3349)
DNA (993bp) protein (331aa)
DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RBG_16_Euryarchaeota_68_12_curated
DNA ligase, putative n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O28549_ARCFU
DNA ligase
13_1_40cm_3_scaffold_3460_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(3356..4132)
DNA (777bp) protein (259aa)
Probable DNA repair protein Toce_0248 n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S0A6_THEOJ
DNA end-binding protein Ku; K10979 DNA end-binding protein Ku Tax=RBG_16_Euryarchaeota_68_12_curated
DNA end-binding protein Ku
13_1_40cm_3_scaffold_3460_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(4172..4624)
DNA (453bp) protein (151aa)
Ferredoxin n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Q4_9ARCH
ferredoxin Tax=RBG_16_Euryarchaeota_68_12_curated
ferredoxin
13_1_40cm_3_scaffold_3460_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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4807..5097
DNA (291bp) protein (97aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_3460_8
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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5214..5618
DNA (405bp) protein (135aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_40cm_3_scaffold_3460_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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5744..5965
DNA (222bp) protein (74aa)
Putative RNA-binding protein, contains TRAM domain n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZJ4_METHD
putative RNA-binding protein, contains TRAM domain Tax=RBG_16_Euryarchaeota_68_12_curated
putative RNA-binding protein, contains TRAM domain
13_1_40cm_3_scaffold_3460_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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6093..7097
DNA (1005bp) protein (335aa)
Marine sediment metagenome DNA, contig: S03H2_S08248 Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_3460_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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7150..7413
DNA (264bp) protein (88aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_3460_12
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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7556..7930
DNA (375bp) protein (125aa)
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_3460_13
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

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comp(7946..8275)
DNA (330bp) protein (110aa)
GAF sensor protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SVC8_9BACT
GAF sensor protein {ECO:0000313|EMBL:BAL59557.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
GAF domain-containing protein
13_1_40cm_3_scaffold_3460_14
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(8803..9444)
DNA (642bp) protein (214aa)
purN; phosphoribosylglycinamide formyltransferase; K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=RBG_16_Euryarchaeota_68_12_curated
Phosphoribosylglycinamide formyltransferase n=1 Tax=Mitsuokella sp. oral taxon 131 str. W9106 RepID=U2V455_9FIRM
purN; phosphoribosylglycinamide formyltransferase, folate-dependent
13_1_40cm_3_scaffold_3460_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(9453..10985)
DNA (1533bp) protein (511aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
Bifunctional purine biosynthesis protein PurH n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8EL26_9FIRM
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
13_1_40cm_3_scaffold_3460_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(11019..11969)
DNA (951bp) protein (317aa)
methylenetetrahydrofolate reductase; K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20] Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037102BE
methylenetetrahydrofolate reductase
13_1_40cm_3_scaffold_3460_17
unknown

Not on your lists

12063..12842
DNA (780bp) protein (260aa)

This feature has no annotations

13_1_40cm_3_scaffold_3460_18
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(12830..13963)
DNA (1134bp) protein (378aa)
Digeranylgeranylglycerophospholipid reductase n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TBI3_METSL
digeranylgeranylglycerophospholipid reductase Tax=RBG_16_Euryarchaeota_68_12_curated
geranylgeranyl reductase family protein
13_1_40cm_3_scaffold_3460_19
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(14219..14722)
DNA (504bp) protein (168aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_3460_20
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

14828..15709
DNA (882bp) protein (294aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:3.5.4.9) Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036CDF9E
folD; bifunctional protein FolD protein
13_1_40cm_3_scaffold_3460_21
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(15794..16036)
DNA (243bp) protein (81aa)
collagen triple helix repeat-containing protein Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_3460_22
unknown

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16360..16527
DNA (168bp) protein (56aa)

This feature has no annotations

Displaying 22 items

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