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13_1_40cm_3_scaffold_5004

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_5004_1
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(1..381)
DNA (381bp) protein (127aa)
Putative Ras family protein n=1 Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
small GTP-binding protein Tax=RBG_16_Euryarchaeota_68_12_curated
small GTP-binding protein domain-containing protein
13_1_40cm_3_scaffold_5004_2
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(489..1046)
DNA (558bp) protein (186aa)
Putative Ras family protein n=1 Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
small GTP-binding protein Tax=RBG_16_Euryarchaeota_68_12_curated
small GTP-binding protein
13_1_40cm_3_scaffold_5004_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(1133..1693)
DNA (561bp) protein (187aa)
Putative Ras family protein n=1 Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
small GTP-binding protein Tax=RBG_16_Euryarchaeota_68_12_curated
small GTP-binding protein
13_1_40cm_3_scaffold_5004_4
unknown

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1882..2067
DNA (186bp) protein (62aa)

This feature has no annotations

13_1_40cm_3_scaffold_5004_5

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2308..3309
DNA (1002bp) protein (334aa)
50S ribosomal protein L3 n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8W8_9EURY
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|SAAS:SAAS00023038}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl3p; 50S ribosomal protein L3P
13_1_40cm_3_scaffold_5004_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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3312..4292
DNA (981bp) protein (327aa)
50S ribosomal protein L4 n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5I4_9EURY
rpl4lp; 50S ribosomal protein L4P Tax=RBG_16_Euryarchaeota_68_12_curated
rpl4lp; 50S ribosomal protein L4P
13_1_40cm_3_scaffold_5004_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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4289..4576
DNA (288bp) protein (96aa)
50S ribosomal protein L23P n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T519_9EURY
50S ribosomal protein L23P Tax=RBG_16_Euryarchaeota_68_12_curated
50S ribosomal protein L23P
13_1_40cm_3_scaffold_5004_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

4576..5289
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000381615B
ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RBG_16_Euryarchaeota_68_12_curated
ribosomal protein L2
13_1_40cm_3_scaffold_5004_9
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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5296..5763
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037DD1D8
SSU ribosomal protein S15e (S19p) Tax=RBG_16_Euryarchaeota_68_13_curated
30S ribosomal protein S19
13_1_40cm_3_scaffold_5004_10

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5771..6226
DNA (456bp) protein (152aa)
50S ribosomal protein L22 n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000366A406
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal)
13_1_40cm_3_scaffold_5004_11
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


6227..6745
DNA (519bp) protein (173aa)
30S ribosomal protein S3 n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5I7_9EURY
rps3p; 30S ribosomal protein S3P Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
rps3p; 30S ribosomal protein S3P
13_1_40cm_3_scaffold_5004_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


6742..7089
DNA (348bp) protein (116aa)
rps3p; 30S ribosomal protein S3P Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_40cm_3_scaffold_5004_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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7090..7344
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000378FEBB
LSU ribosomal protein L29P Tax=RBG_16_Euryarchaeota_68_12_curated
50S ribosomal protein L29P
13_1_40cm_3_scaffold_5004_14
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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7341..7592
DNA (252bp) protein (84aa)
ribonuclease P protein component 1; K03538 ribonuclease P protein subunit POP4 [EC:3.1.26.5] Tax=RBG_16_Euryarchaeota_68_12_curated
Ribonuclease P protein component 1 n=1 Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8AM66_METOI
ribonuclease P protein component 1
13_1_40cm_3_scaffold_5004_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


7599..8054
DNA (456bp) protein (152aa)
Ribosomal protein S17, archaeal n=1 Tax=mine drainage metagenome RepID=T0ZTH1_9ZZZZ
archaeal ribosomal protein S17P Tax=RBG_16_Euryarchaeota_68_12_curated
30S ribosomal protein S17P
13_1_40cm_3_scaffold_5004_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


8051..8449
DNA (399bp) protein (133aa)
50S ribosomal protein L14 n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036B9A97
50S ribosomal protein L14P Tax=RBG_16_Euryarchaeota_68_12_curated
50S ribosomal protein L14P
13_1_40cm_3_scaffold_5004_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


8460..8822
DNA (363bp) protein (121aa)
50S ribosomal protein L24P n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HNP8_ACIS0
ribosomal protein L24p/L26e, archaeal/eukaryotic
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_5004_18
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

8827..9549
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003630352
30S ribosomal protein S4e Tax=RBG_16_Euryarchaeota_68_12_curated
rps4e; 30S ribosomal protein S4e
13_1_40cm_3_scaffold_5004_19

Not on your lists


9531..10016
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000372A27B
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
LSU ribosomal protein L5P
13_1_40cm_3_scaffold_5004_20
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


10013..10159
DNA (147bp) protein (49aa)
30S ribosomal protein S14 type Z n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8Y0_9EURY
rps14P; 30S ribosomal protein S14P Tax=RBG_16_Euryarchaeota_68_12_curated
rps14P; 30S ribosomal protein S14P
13_1_40cm_3_scaffold_5004_21
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


10168..10557
DNA (390bp) protein (130aa)
30S ribosomal protein S8 n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036D309E
SSU ribosomal protein S15Ae (S8p) Tax=RBG_16_Euryarchaeota_68_12_curated
rps8p; 30S ribosomal protein S8P
13_1_40cm_3_scaffold_5004_22
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


10554..11111
DNA (558bp) protein (186aa)
50S ribosomal protein L6 n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000372DEA1
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RBG_16_Euryarchaeota_68_12_curated
rpl6p; 50S ribosomal protein L6
13_1_40cm_3_scaffold_5004_23
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

11116..11988
DNA (873bp) protein (291aa)
50S ribosomal protein L32e n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T860_9EURY
ribosomal protein L32E Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
rpl32e; 50S ribosomal protein L32e
13_1_40cm_3_scaffold_5004_24
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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11988..12455
DNA (468bp) protein (156aa)
50S ribosomal protein L19e n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BI70_9EURY
LSU ribosomal protein L19E Tax=RBG_16_Euryarchaeota_68_13_curated
LSU ribosomal protein L19e
13_1_40cm_3_scaffold_5004_25

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12452..12955
DNA (504bp) protein (168aa)
50S ribosomal protein L18 n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036D4605
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L18
13_1_40cm_3_scaffold_5004_26
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


12957..13799
DNA (843bp) protein (281aa)
30S ribosomal protein S5 n=2 Tax=Euryarchaeota RepID=M9SL02_9EURY
rps5p; 30S ribosomal protein S5P Tax=RBG_16_Euryarchaeota_67_27_curated
SSU ribosomal protein S2e (S5p)
13_1_40cm_3_scaffold_5004_27
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


13796..14212
DNA (417bp) protein (139aa)
50S ribosomal protein L30P n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAK1_METCZ
ribosomal protein L30P; K02907 large subunit ribosomal protein L30 Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
rpl30p; 50S ribosomal protein L30
13_1_40cm_3_scaffold_5004_28

Not on your lists


14213..14647
DNA (435bp) protein (145aa)
LSU ribosomal protein L27Ae (L15p) n=2 Tax=Euryarchaeota RepID=M9SFD2_9EURY
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
LSU ribosomal protein L27Ae (L15p)
13_1_40cm_3_scaffold_5004_29
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

14667..15071
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036005F0
preprotein translocase SecY Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Preprotein translocase secY subunit
Displaying 29 items

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