ggKbase home page

13_1_40cm_3_scaffold_4533

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_4533_1
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


1..351
DNA (351bp) protein (117aa)
30S ribosomal protein S6e n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HK77_ACIS0
ribosomal protein S6E (S10) Tax=RBG_16_Euryarchaeota_68_12_curated
ribosomal protein S6E (S10)
13_1_40cm_3_scaffold_4533_2

Not on your lists

519..1058
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YTH4_AEQSU
Uncharacterized protein {ECO:0000313|EMBL:KKN10720.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
protein-S-isoprenylcysteine methyltransferase
13_1_40cm_3_scaffold_4533_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


1140..2372
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036DC8F0
translation initiation factor IF-2 subunit gamma Tax=RBG_16_Euryarchaeota_68_12_curated
translation initiation factor IF-2
13_1_40cm_3_scaffold_4533_4
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


2830..3867
DNA (1038bp) protein (346aa)
Protein pelota homolog n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T7R6_9EURY rbh
putative cell division protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
putative cell division protein
13_1_40cm_3_scaffold_4533_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(3930..4394)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037C5D1A
hypothetical protein; K09120 hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_4533_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(4396..4779)
DNA (384bp) protein (128aa)
Peptidyl-tRNA hydrolase n=1 Tax=Thermococcus sp. CL1 RepID=I3ZS83_9EURY
peptidyl-tRNA hydrolase Tax=RBG_16_Euryarchaeota_68_12_curated
peptidyl-tRNA hydrolase
13_1_40cm_3_scaffold_4533_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(4776..5447)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HK33_ACIS0
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
Protein of unknown function (DUF1616)
13_1_40cm_3_scaffold_4533_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

5483..6511
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000380433D
RecA-superfamily ATPase possibly involved in signal transduction Tax=RBG_16_Euryarchaeota_68_12_curated
circadian clock protein, KaiC
13_1_40cm_3_scaffold_4533_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

6564..6920
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CMB5_DESK7
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_4533_10
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(6924..7262)
DNA (339bp) protein (113aa)
hypothetical protein n=3 Tax=Archaea RepID=UPI00038280C6
glyoxalase/bleomycin resistance protein/dioxygenase Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_40cm_3_scaffold_4533_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(7302..8051)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MGE0_9EURY
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_4533_12
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

9027..10052
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037EA70C
7-cyano-7-deazaguanine tRNA-ribosyltransferase Tax=RBG_16_Euryarchaeota_68_12_curated
7-cyano-7-deazaguanine tRNA-ribosyltransferase
13_1_40cm_3_scaffold_4533_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(10041..10304)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7T9N6_9EURY
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_4533_14
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

10316..10513
DNA (198bp) protein (66aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_4533_trna_1
unknown

Not on your lists

comp(10546..10618)
DNA (73bp)
transferRNA
13_1_40cm_3_scaffold_4533_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(10667..11410)
DNA (744bp) protein (248aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_4533_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(11407..11685)
DNA (279bp) protein (93aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_4533_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(11682..13115)
DNA (1434bp) protein (478aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003821D54
tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase Tax=RBG_16_Euryarchaeota_68_12_curated
2-methylthioadenine synthetase
13_1_40cm_3_scaffold_4533_18
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

13229..13864
DNA (636bp) protein (212aa)
O-methyltransferase family protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SRI1_9BACT
O-methyltransferase Tax=RBG_16_Euryarchaeota_68_12_curated
O-methyltransferase
13_1_40cm_3_scaffold_4533_19
unknown

Not on your lists

13963..14502
DNA (540bp) protein (180aa)

This feature has no annotations

13_1_40cm_3_scaffold_4533_20
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

14616..15881
DNA (1266bp) protein (422aa)
D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase (EC:3.1.3.-); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
D,D-heptose 1,7-bisphosphate phosphatase n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L029_9BACT
histidinol-phosphate phosphatase family protein
13_1_40cm_3_scaffold_4533_21
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

15992..18811
DNA (2820bp) protein (940aa)
PE-PGRS family protein n=1 Tax=Mycobacterium liflandii (strain 128FXT) RepID=L7VAY0_MYCL1
PE-PGRS family protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
PE-PGRS family protein
13_1_40cm_3_scaffold_4533_22
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

18846..20291
DNA (1446bp) protein (482aa)
Putative uncharacterized protein (Fragment) n=1 Tax=uncultured archaeon GZfos26D8 RepID=Q5XQ48_9ARCH
PE-PGRS family protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
ompA; outer membrane protein A
13_1_40cm_3_scaffold_4533_23
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

20353..21852
DNA (1500bp) protein (500aa)
aldehyde dehydrogenase (EC:1.2.1.3); K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] Tax=RBG_16_Euryarchaeota_68_12_curated
aldehyde dehydrogenase (EC:1.2.1.3)
Aldehyde dehydrogenase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8Q0T7_METMA
13_1_40cm_3_scaffold_4533_24
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(21923..22582)
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_ANIW137P11 RepID=B3T535_9ZZZZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84733.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitr
13_1_40cm_3_scaffold_4533_25
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(22757..24052)
DNA (1296bp) protein (432aa)
cytochrome C biogenesis protein transmembrane region Tax=RBG_16_Euryarchaeota_68_12_curated
Cytochrome c biogenesis protein transmembrane region id=2499493 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Natrinema taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cytochrome c biogenesis protein, transmembrane region
Displaying 26 items

View Taxonomy