ggKbase home page

13_1_40cm_3_scaffold_448

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_448_1
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

1..1062
DNA (1062bp) protein (354aa)
Preprotein translocase, SecY subunit n=1 Tax=mine drainage metagenome RepID=T1A470_9ZZZZ
preprotein translocase SecY Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
preprotein translocase SecY
13_1_40cm_3_scaffold_448_2
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(1067..1612)
DNA (546bp) protein (182aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_40cm_3_scaffold_448_3
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(1649..2191)
DNA (543bp) protein (181aa)
Sulfonate/nitrate transport system ATP-binding protein n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RLE4_MOOTA
sulfonate/nitrate transport system ATP-binding protein Tax=RBG_16_Euryarchaeota_67_27_curated
sulfonate/nitrate transport system ATP-binding protein
13_1_40cm_3_scaffold_448_4
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(2206..3006)
DNA (801bp) protein (267aa)
ABC transporter related protein n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RLE9_MOOTA
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein Tax=RBG_16_Euryarchaeota_67_27_curated
ABC transporter
13_1_40cm_3_scaffold_448_5
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(3008..4702)
DNA (1695bp) protein (565aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RLF0_MOOTA rbh
binding-protein dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein Tax=RBG_16_Euryarchaeota_67_27_curated
binding-protein dependent transport system inner membrane protein
13_1_40cm_3_scaffold_448_6
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(4762..5691)
DNA (930bp) protein (310aa)
ornithine carbamoyltransferase (EC:2.1.3.3); K00611 ornithine carbamoyltransferase [EC:2.1.3.3] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Ornithine carbamoyltransferase, catabolic n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HNX1_ACIS0
ornithine carbamoyltransferase
13_1_40cm_3_scaffold_448_7
unknown

Not on your lists

5783..6007
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_40cm_3_scaffold_448_trna_1
unknown

Not on your lists

6037..6110
DNA (74bp)
transferRNA
13_1_40cm_3_scaffold_448_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

6254..10534
DNA (4281bp) protein (1427aa)
ileS; isoleucyl-tRNA ligase (EC:6.1.1.5) Tax=RBG_16_Euryarchaeota_68_12_curated
ileS; isoleucyl-tRNA ligase (EC:6.1.1.5)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037EC543
13_1_40cm_3_scaffold_448_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(10383..11318)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000368BEB5
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_448_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(11315..12481)
DNA (1167bp) protein (389aa)
Putative uncharacterized protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D6I3_METSW
hypothetical protein; K09123 hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_448_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(12483..12902)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZ85_METFV
hypothetical protein; K07581 hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_448_12
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(12892..13416)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000373C57C
dephospho-CoA kinase Tax=RBG_16_Euryarchaeota_68_12_curated
dephospho-CoA kinase
13_1_40cm_3_scaffold_448_13
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(13440..14777)
DNA (1338bp) protein (446aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_40cm_3_scaffold_448_14
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

14887..15906
DNA (1020bp) protein (340aa)
pyridoxine biosynthesis protein; K06215 pyridoxine biosynthesis protein [EC:4.-.-.-] Tax=RBG_16_Euryarchaeota_68_12_curated
Pyridoxal biosynthesis lyase PdxS n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IB18_ACIB4 rbh
pyridoxine biosynthesis protein
13_1_40cm_3_scaffold_448_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(15860..16849)
DNA (990bp) protein (330aa)
Nucleolar GTP-binding-1 domain protein n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E878_METMS
small GTP-binding protein; K06943 nucleolar GTP-binding protein Tax=RBG_16_Euryarchaeota_68_12_curated
nucleolar GTP-binding-1 domain protein
13_1_40cm_3_scaffold_448_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(16879..17415)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000370E17A
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_448_17
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(17475..18413)
DNA (939bp) protein (313aa)
Wyosine biosynthesis protein TYW1 n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HM98_ACIS0
wyosine biosynthesis protein TYW1 Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
wyosine biosynthesis protein TYW1
13_1_40cm_3_scaffold_448_18
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

18507..19178
DNA (672bp) protein (224aa)
Uncharacterized protein conserved in bacteria n=1 Tax=uncultured marine group II euryarchaeote EF100_57A08 RepID=A9QP31_9EURY
putative transmembrane protein
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_448_19
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(19180..19683)
DNA (504bp) protein (168aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_448_20
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(19742..21184)
DNA (1443bp) protein (481aa)
Replication factor C large subunit n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TAB9_9EURY
Replication factor C large subunit Tax=RBG_16_Euryarchaeota_68_12_curated
Replication factor C large subunit
13_1_40cm_3_scaffold_448_21
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(21575..22327)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003723D67
site-specific recombinase for integration and excision Tax=RBG_16_Euryarchaeota_68_12_curated
site-specific recombinase for integration and excision
13_1_40cm_3_scaffold_448_22
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(22331..23197)
DNA (867bp) protein (289aa)
Site-specific recombinase, DNA invertase Pin n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VQ41_9EURY
site-specific recombinase for integration and excision Tax=RBG_16_Euryarchaeota_68_12_curated
site-specific recombinase for integration and excision
13_1_40cm_3_scaffold_448_23
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(23449..24744)
DNA (1296bp) protein (432aa)
hmgA-1; hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.34 1.1.1.88); K00054 hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hydroxymethylglutaryl-CoA reductase (EC:1.1.1.88)
Hydroxymethylglutaryl-CoA reductase, degradative n=2 Tax=Archaeoglobus veneficus RepID=F2KML3_ARCVS
13_1_40cm_3_scaffold_448_24
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(24818..25285)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / M1) RepID=D3E4E4_METRM
TM2 domain-containing protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_448_25
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

25429..26874
DNA (1446bp) protein (482aa)
Branched-chain/neutral amino acids amide ABC transporter periplasmic substrate-binding protein 1 n=2 Tax=Haloarcula RepID=M0JVP7_9EURY
Branched-chain/neutral amino acids amide ABC transporter periplasmic substrate-binding protein 1 {ECO:0000313|EMBL:EMA12009.1}; TaxID=662475 species="Archaea; Euryarchaeota; Halobacteria; Halobacteria
hypothetical protein
13_1_40cm_3_scaffold_448_26
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(26923..27639)
DNA (717bp) protein (239aa)
ABC-type transport system ATP-binding protein (Probable substrate branched-chain amino acids) n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3INZ2_NATPD
abc05a1; branched chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Euryarchaeota_68_13_curated
abc05a1; branched chain amino acid ABC transporter ATP-binding protein
13_1_40cm_3_scaffold_448_27
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(27744..28514)
DNA (771bp) protein (257aa)
ABC-type branched-chain amino acid transport systems, ATP-binding protein I n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4IZW8_9EURY
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Euryarchaeota_67_27_curated
ABC transporter
13_1_40cm_3_scaffold_448_28
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(28511..29536)
DNA (1026bp) protein (342aa)
Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) n=1 Tax=Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 RepID=M5EF48_9FIRM
hydrophobic amino acid ABC transporter permease Tax=RBG_16_Euryarchaeota_68_13_curated
livM; High-affinity branched-chain amino acid transport system permease protein LivM (LIV-I protein M)
13_1_40cm_3_scaffold_448_29
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(29529..30509)
DNA (981bp) protein (327aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NP75_HALBP
hydrophobic amino acid ABC transporter permease Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
amino acid/amide ABC transporter membrane protein 1, haat family
Displaying items 1-30 of 45 in total

View Taxonomy