ggKbase home page

13_1_40cm_3_scaffold_6449

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_6449_1
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

2..601
DNA (600bp) protein (200aa)
Peroxiredoxin n=1 Tax=Alcanivorax sp. P2S70 RepID=U7G112_9GAMM
hypothetical protein; K07397 putative redox protein Tax=RBG_16_Euryarchaeota_68_12_curated
OsmC/Ohr family protein
13_1_40cm_3_scaffold_6449_2
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

674..1435
DNA (762bp) protein (254aa)
Protein containing DUF75 (Fragment) n=1 Tax=mine drainage metagenome RepID=T1BU48_9ZZZZ
ATP-grasp superfamily enzyme Tax=RBG_16_Euryarchaeota_68_12_curated
ATP-grasp superfamily enzyme
13_1_40cm_3_scaffold_6449_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(1432..1863)
DNA (432bp) protein (144aa)
RNA 3'-terminal-phosphate cyclase (EC:6.5.1.4); K01974 RNA 3'-terminal phosphate cyclase [EC:6.5.1.4] Tax=RBG_16_Euryarchaeota_68_12_curated
RNA 3'-terminal-phosphate cyclase (EC:6.5.1.4)
RNA 3'-terminal phosphate cyclase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RTCA_NITMU
13_1_40cm_3_scaffold_6449_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(1977..3860)
DNA (1884bp) protein (628aa)
calcium-translocating P-type ATPase (EC:3.6.3.8); K01537 Ca2+-transporting ATPase [EC:3.6.3.8] Tax=RBG_16_Euryarchaeota_68_12_curated
Cation transport ATPase n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D194_PELTS
MgtA; cation transport ATPase
13_1_40cm_3_scaffold_6449_5
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(3842..5071)
DNA (1230bp) protein (410aa)
P-type HAD superfamily ATPase; K01537 Ca2+-transporting ATPase [EC:3.6.3.8] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
calcium-translocating P-type ATPase (EC:3.6.3.8)
Calcium-translocating P-type ATPase, PMCA-type n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CKU3_DESK7
13_1_40cm_3_scaffold_6449_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

5289..7061
DNA (1773bp) protein (591aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000371F843 rbh
sodium/hydrogen exchanger family protein; K03455 monovalent cation:H+ antiporter-2, CPA2 family Tax=RBG_16_Euryarchaeota_68_12_curated
sodium/hydrogen exchanger
13_1_40cm_3_scaffold_6449_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(6911..7663)
DNA (753bp) protein (251aa)
Hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Metallo-beta-lactamase domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NAJ3_9CLOT
Zn-dependent hydrolases, including glyoxylases Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_6449_8
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

7774..9426
DNA (1653bp) protein (551aa)
hypothetical protein id=14632489 bin=bin9_gal15 species=Flavobacterium sp. CF136 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=bin9_gal15 organism_group=GAL15
hypothetical protein Tax=CSP1_3_Armatimonadetes
hypothetical protein
13_1_40cm_3_scaffold_6449_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

9576..10010
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B4EDFC
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_6449_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

10073..10237
DNA (165bp) protein (55aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_6449_trna_1
unknown

Not on your lists

comp(10249..10320)
DNA (72bp)
transferRNA
13_1_40cm_3_scaffold_6449_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(10427..10693)
DNA (267bp) protein (89aa)
UPF0147 protein MMINT_16370 n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8A0_9EURY
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_6449_12
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(10726..11046)
DNA (321bp) protein (107aa)
Transcriptional regulator, AsnC family n=1 Tax=mine drainage metagenome RepID=T1BG18_9ZZZZ
transcriptional regulator, AsnC family Tax=RBG_16_Euryarchaeota_68_12_curated
transcriptional regulator, AsnC family
13_1_40cm_3_scaffold_6449_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(11093..11962)
DNA (870bp) protein (290aa)
Putative amidophosphoribosyltransferase n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HM02_ACIS0
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
putative amidophosphoribosyltransferase
13_1_40cm_3_scaffold_6449_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12101..13207
DNA (1107bp) protein (369aa)
FAD dependent oxidoreductase id=4973977 bin=GWA2_Methylomirabilis_73_35 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FAD dependent oxidoreductase Tax=GWA2_Rokubacteria_73_35_curated
glycine/D-amino acid oxidase, deaminating
13_1_40cm_3_scaffold_6449_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(13086..13886)
DNA (801bp) protein (267aa)
Ribosomal RNA small subunit methyltransferase Nep1 n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AEK7_PYRYC
ribosome biogenesis protein; K14568 essential for mitotic growth 1 Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_6449_16
unknown

Not on your lists

comp(13904..14530)
DNA (627bp) protein (209aa)

This feature has no annotations

13_1_40cm_3_scaffold_6449_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(14573..14800)
DNA (228bp) protein (76aa)
hypothetical protein; K06863 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.-] Tax=RBG_16_Euryarchaeota_68_12_curated
5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WNI2_METH6
5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
Displaying 18 items

View Taxonomy