ggKbase home page

13_1_40cm_3_scaffold_8472

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_8472_1
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


1..1323
DNA (1323bp) protein (441aa)
Methionine--tRNA ligase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TWX7_9EURY
methionyl-tRNA synthetase Tax=RBG_16_Euryarchaeota_68_12_curated
methionyl-tRNA synthetase
13_1_40cm_3_scaffold_8472_2
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(1320..1784)
DNA (465bp) protein (155aa)
Roadblock/LC7 family protein n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KQ29_ARCVS
Roadblock/LC7 family protein; K07131 Tax=RBG_16_Euryarchaeota_68_13_curated
Roadblock/LC7 family protein
13_1_40cm_3_scaffold_8472_3
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(1859..2218)
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000360600D
Roadblock/LC7 family protein; K07131 Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Roadblock/LC7 family protein
13_1_40cm_3_scaffold_8472_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(2318..2737)
DNA (420bp) protein (140aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=RBG_16_Euryarchaeota_68_12_curated
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=RISB_METKA
ribH; 6,7-dimethyl-8-ribityllumazine synthase
13_1_40cm_3_scaffold_8472_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(2740..3210)
DNA (471bp) protein (157aa)
riboflavin synthase alpha chain (EC:2.5.1.-) Tax=RBG_16_Euryarchaeota_68_12_curated
ribC; riboflavin synthase (EC:2.5.1.9)
Riboflavin synthase n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IC31_ACIB4
13_1_40cm_3_scaffold_8472_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(3223..3684)
DNA (462bp) protein (154aa)
FAD synthase n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HME3_ACIS0
cytidyltransferase-related enzyme Tax=RBG_16_Euryarchaeota_68_12_curated
cytidyltransferase-related enzyme
13_1_40cm_3_scaffold_8472_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(3684..4388)
DNA (705bp) protein (235aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase; K02858 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] Tax=RBG_16_Euryarchaeota_68_12_curated
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.99.12)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003741C0A
13_1_40cm_3_scaffold_8472_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

4518..5672
DNA (1155bp) protein (385aa)
bifunctional phosphoglucose/phosphomannose isomerase; K15916 glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] Tax=RBG_16_Euryarchaeota_68_12_curated
Bifunctional phosphoglucose/phosphomannose isomerase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7T9Y2_9EURY
bifunctional phosphoglucose/phosphomannose isomerase
13_1_40cm_3_scaffold_8472_trna_1
unknown

Not on your lists

comp(5535..5642)
DNA (108bp)
transferRNA
13_1_40cm_3_scaffold_8472_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(5665..6804)
DNA (1140bp) protein (380aa)
peptidase M48 Ste24p; K06013 STE24 endopeptidase [EC:3.4.24.84] Tax=RBG_16_Euryarchaeota_68_12_curated
Peptidase, M48 family n=1 Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z6L8_DEHE1
peptidase M48
13_1_40cm_3_scaffold_8472_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(6801..7748)
DNA (948bp) protein (316aa)
TruB; H/ACA RNA-protein complex component Cbf5p; K11131 H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] Tax=RBG_16_Euryarchaeota_68_12_curated
truB; putative tRNA pseudouridine synthase B (EC:5.4.99.25)
Probable tRNA pseudouridine synthase B n=1 Tax=Methanobacterium sp. MB1 RepID=U6EAM6_9EURY rbh
13_1_40cm_3_scaffold_8472_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(7745..8305)
DNA (561bp) protein (187aa)
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14] Tax=RBG_16_Euryarchaeota_68_12_curated
Cytidylate kinase n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HNR2_ACIS0
cytidylate kinase, putative
13_1_40cm_3_scaffold_8472_12
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(8277..9074)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037B39B5
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_8472_13
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

9263..9730
DNA (468bp) protein (156aa)
Rhodanese domain protein n=1 Tax=mine drainage metagenome RepID=T1C0G0_9ZZZZ
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein
13_1_40cm_3_scaffold_8472_14
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(9823..10254)
DNA (432bp) protein (144aa)
hypothetical protein Tax=RBG_16_RIF_CHLX_70_13_curated
13_1_40cm_3_scaffold_8472_15
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

10413..10892
DNA (480bp) protein (160aa)
Putative membrane protein n=1 Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2E0U3_9ARCH
major facilitator transporter Tax=RBG_16_Euryarchaeota_68_13_curated
arabinose efflux permease family protein
13_1_40cm_3_scaffold_8472_16
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(10962..11372)
DNA (411bp) protein (137aa)
Uncharacterized protein Tax=RBG_16_Planctomycetes_55_9_curated
Uncharacterized protein id=4736356 bin=GWC2_Bacteroidetes_40_22 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
Displaying 17 items

View Taxonomy