ggKbase home page

13_1_40cm_3_scaffold_86

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_86_1
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


comp(1..918)
DNA (918bp) protein (306aa)
Diphthamide synthase subunit n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1P9W1_METMZ
diphthamide biosynthesis protein; K07561 diphthamide synthase subunit DPH2 Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
dph2; diphthamide synthase subunit
13_1_40cm_3_scaffold_86_2
unknown

Not on your lists

comp(1163..1447)
DNA (285bp) protein (95aa)

This feature has no annotations

13_1_40cm_3_scaffold_86_3
unknown

Not on your lists

comp(1502..2176)
DNA (675bp) protein (225aa)

This feature has no annotations

13_1_40cm_3_scaffold_86_4
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


comp(2238..2747)
DNA (510bp) protein (170aa)
50S ribosomal protein L10e n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7T9E8_9EURY
rpl10e; 50S ribosomal protein L10AE; K02866 large subunit ribosomal protein L10e Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
50S ribosomal protein L10E
13_1_40cm_3_scaffold_86_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(3148..4647)
DNA (1500bp) protein (500aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6Q3W7_9ZZZZ
BNR/Asp-box repeat-containing protein Tax=RBG_16_Euryarchaeota_68_12_curated
BNR/Asp-box repeat-containing protein
13_1_40cm_3_scaffold_86_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(4768..5010)
DNA (243bp) protein (81aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_86_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

5160..5891
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000365E8E8
putative archaeal kinase Tax=RBG_16_Euryarchaeota_68_12_curated
putative archaeal kinase
13_1_40cm_3_scaffold_86_8
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

5892..6962
DNA (1071bp) protein (357aa)
isopentenyl pyrophosphate isomerase (EC:5.3.3.2); K01823 isopentenyl-diphosphate delta-isomerase [EC:5.3.3.2] Tax=RBG_16_Euryarchaeota_67_27_curated
Isopentenyl-diphosphate delta-isomerase, FMN-dependent n=2 Tax=mine drainage metagenome RepID=T1BSF2_9ZZZZ
hypothetical protein
13_1_40cm_3_scaffold_86_9
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

7275..8084
DNA (810bp) protein (270aa)
Bifunctional short chain isoprenyl diphosphate synthase; K13787 geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Geranylgeranyl pyrophosphate synthase id=3817391 bin=GWA2_Ignavibacteria_55_11 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
geranylgeranyl pyrophosphate synthetase
13_1_40cm_3_scaffold_86_10
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(8081..8749)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037AEB38
radB; DNA repair and recombination protein RadB Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
radB; DNA repair and recombination protein RadB
13_1_40cm_3_scaffold_86_11
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

9043..13989
DNA (4947bp) protein (1649aa)
BNR/Asp-box repeat domain protein n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IFE3_ACIB4
type I secretion target repeat-containing protein Tax=RBG_16_Acidobacteria_64_8_curated
hypothetical protein
13_1_40cm_3_scaffold_86_12
R_Nitrospirae_40_19, Nitrospirae, Bacteria

Not on your lists

comp(13951..19095)
DNA (5145bp) protein (1715aa)
von Willebrand factor, type A n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B5M2_METTP
BNR/Asp-box repeat-containing protein Tax=RIFCSPHIGHO2_02_FULL_Nitrospirae_40_19_curated
von Willebrand factor, type A
13_1_40cm_3_scaffold_86_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

19589..24430
DNA (4842bp) protein (1614aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_86_14
RIFOXYD2_FULL_Elusimicrobia_34_15_curated, Elusimicrobia, Bacteria

Not on your lists

comp(24763..29439)
DNA (4677bp) protein (1559aa)
hypothetical protein n=1 Tax=unclassified candidate division KSB1 RepID=UPI00037F13ED
hypothetical protein Tax=RIFOXYD2_FULL_Elusimicrobia_34_15_curated
13_1_40cm_3_scaffold_86_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

29629..33165
DNA (3537bp) protein (1179aa)
Cytoplasmic membrane protein n=3 Tax=Leptospira interrogans RepID=G7QGA1_LEPII
cytoplasmic membrane protein
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_86_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

33898..34632
DNA (735bp) protein (245aa)
NHL repeat containing protein Tax=RBG_16_Euryarchaeota_68_12_curated
Displaying 16 items

View Taxonomy