ggKbase home page

13_1_40cm_3_scaffold_92

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_92_1
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(2..745)
DNA (744bp) protein (248aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8C3_GEMAT
hypothetical membrane protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAH38483.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (str
13_1_40cm_3_scaffold_92_2
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(899..1591)
DNA (693bp) protein (231aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] (EC:5.3.1.16); K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] Tax=GWC2_Gemmatimonadetes_7
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D0I1_9CLOT
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
13_1_40cm_3_scaffold_92_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1606..2862)
DNA (1257bp) protein (419aa)
Peptidase M23B family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8C2_GEMAT
peptidase M23B family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Peptidase M23
13_1_40cm_3_scaffold_92_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2862..3971)
DNA (1110bp) protein (370aa)
Cell division protein FtsZ n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8C1_GEMAT
ftsZ; cell division protein FtsZ; K03531 cell division protein FtsZ Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cell division protein FtsZ
13_1_40cm_3_scaffold_92_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3991..5244)
DNA (1254bp) protein (418aa)
Cell division protein ftsA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B3_GEMAT
ftsA; cell division protein FtsA; K03590 cell division protein FtsA Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cell division protein FtsA
13_1_40cm_3_scaffold_92_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5241..5984)
DNA (744bp) protein (248aa)
Putative cell division protein FtsQ n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B2_GEMAT
ftsQ; putative cell division protein FtsQ; K03589 cell division protein FtsQ Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Polypeptide-transport-associated domain protein FtsQ-type
13_1_40cm_3_scaffold_92_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(6024..7265)
DNA (1242bp) protein (414aa)
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8); K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B1_GEMAT
UDP-N-acetylmuramate--L-alanine ligase
13_1_40cm_3_scaffold_92_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7376..8467)
DNA (1092bp) protein (364aa)
murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227); K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B0_GEMAT
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
13_1_40cm_3_scaffold_92_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8464..9390)
DNA (927bp) protein (309aa)
Cell division protein FtsW n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8A9_GEMAT
ftsW; cell division protein FtsW; K03588 cell division protein FtsW Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cell cycle protein
13_1_40cm_3_scaffold_92_10
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9532..10887)
DNA (1356bp) protein (452aa)
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9); K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] Tax=GWC2_Gemmatimonadetes_71_10_curated
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8A8_GEMAT
UDP-N-acetylmuramoylalanine--D-glutamate ligase
13_1_40cm_3_scaffold_92_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10884..12005)
DNA (1122bp) protein (374aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13); K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] Tax=GWC2_Gemmatimonadetes_71_10_curated
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=MRAY_GEMAT rbh
13_1_40cm_3_scaffold_92_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(12021..13382)
DNA (1362bp) protein (454aa)
murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10); K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes
murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8A6_GEMAT rbh
13_1_40cm_3_scaffold_92_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13379..14722)
DNA (1344bp) protein (448aa)
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13); K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=GWC2_Gemmatimonad
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8A5_GEMAT
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
13_1_40cm_3_scaffold_92_14
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14719..16668)
DNA (1950bp) protein (650aa)
ftsI; cell division protein FtsI (EC:2.4.1.129); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] Tax=GWC2_Gemmatimonadetes_71_10_curated
Cell division protein FtsI n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8A4_GEMAT
penicillin-binding protein transpeptidase
13_1_40cm_3_scaffold_92_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(16671..16961)
DNA (291bp) protein (97aa)
cell division protein FtsL family protein
Cell division protein FtsL family protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_3_scaffold_92_16
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16966..17958)
DNA (993bp) protein (331aa)
mraW; putative S-adenosyl-methyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H {ECO:0000255|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000255|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000255|HAMAP-Rule:MF_0100
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RSMH_GEMAT
13_1_40cm_3_scaffold_92_trna_2
unknown

Not on your lists

comp(17978..18051)
DNA (74bp)
transferRNA
13_1_40cm_3_scaffold_92_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18221..19798)
DNA (1578bp) protein (526aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_92_trna_1
unknown

Not on your lists

comp(19832..19905)
DNA (74bp)
transferRNA
13_1_40cm_3_scaffold_92_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19920..20105)
DNA (186bp) protein (62aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_92_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(20140..20973)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A899_GEMAT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_3_scaffold_92_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(21000..21866)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A898_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_92_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21874..22371)
DNA (498bp) protein (166aa)
CheW protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SM06_9DELT
cheW2; chemotaxis protein Chew Tax=GWC2_Gemmatimonadetes_71_10_curated
cheW; Chemotaxis protein CheW
13_1_40cm_3_scaffold_92_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(22368..22775)
DNA (408bp) protein (136aa)
CheW protein n=1 Tax=Thermincola potens (strain JR) RepID=D5X903_THEPJ
chemotaxis protein CheW; K03408 purine-binding chemotaxis protein CheW Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
CheW protein
13_1_40cm_3_scaffold_92_23
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(22772..23863)
DNA (1092bp) protein (364aa)
cheB; chemotaxis response regulator protein-glutamate methylesterase (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemm
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A896_GEMAT
13_1_40cm_3_scaffold_92_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(23847..24353)
DNA (507bp) protein (169aa)
cheD; chemotaxis protein CheD; K03411 chemotaxis protein CheD [EC:3.5.1.44] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cheD; chemoreceptor glutamine deamidase CheD (EC:3.5.1.44)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-77CS RepID=UPI00037C4637
13_1_40cm_3_scaffold_92_25
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(24350..25171)
DNA (822bp) protein (274aa)
chemotaxis protein CheR (EC:2.1.1.80); K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80] id=7201336 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal
MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal {ECO:0000313|EMBL:AHG90599.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_92_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25168..26784)
DNA (1617bp) protein (539aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A894_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_92_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(26784..28718)
DNA (1935bp) protein (645aa)
Chromosomal replication initiator protein dnaA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A893_GEMAT
DnaA family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DnaA family protein
13_1_40cm_3_scaffold_92_28
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(28715..29314)
DNA (600bp) protein (200aa)
Gliding motility protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A892_GEMAT
gliding motility protein Tax=GWC2_Gemmatimonadetes_71_10_curated
ARF/SAR superfamily protein
Displaying items 1-30 of 49 in total

View Taxonomy