ggKbase home page

13_1_40cm_3_scaffold_12455

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_12455_1
unknown

Not on your lists

3..224
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_40cm_3_scaffold_12455_2
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

348..1274
DNA (927bp) protein (309aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxI
GDP-L-fucose synthase n=1 Tax=Thermoanaerobacterium thermosaccharolyticum M0795 RepID=L0IJX1_THETR
nucleoside-diphosphate-sugar epimerase
13_1_40cm_3_scaffold_12455_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

1271..2482
DNA (1212bp) protein (404aa)
group 1 glycosyl transferase (EC:2.4.1.-) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Glycosyl transferase group 1 n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HLK3_CYAP4
group 1 glycosyl transferase
13_1_40cm_3_scaffold_12455_4
unknown

Not on your lists

comp(2452..2739)
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_3_scaffold_12455_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

3004..3402
DNA (399bp) protein (133aa)
nucleoside-diphosphate-sugar epimerase Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
GDP-L-fucose synthase id=4196804 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
nucleoside-diphosphate-sugar epimerase
13_1_40cm_3_scaffold_12455_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

3399..3764
DNA (366bp) protein (122aa)
O-antigen export system permease Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_3_scaffold_12455_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

3737..4501
DNA (765bp) protein (255aa)
Glycosyl transferase, group 1 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UWC1_ROSS1
O-antigen export system permease Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
group 1 glycosyl transferase
13_1_40cm_3_scaffold_12455_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

4498..5112
DNA (615bp) protein (205aa)
sugar transferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
sugar transferase id=12556202 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sugar transferase
13_1_40cm_3_scaffold_12455_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

5109..5894
DNA (786bp) protein (262aa)
Methyltransferase type 12 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PFT4_CHIPD
Putative methyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
type 12 methyltransferase
13_1_40cm_3_scaffold_12455_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

5987..7141
DNA (1155bp) protein (385aa)
geranylgeranyl reductase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
geranylgeranyl reductase id=12556201 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
geranylgeranyl reductase
13_1_40cm_3_scaffold_12455_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

7144..8373
DNA (1230bp) protein (410aa)
Tetratricopeptide TPR_4 n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NMM6_ROSCS
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_3_scaffold_12455_12
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(8709..9356)
DNA (648bp) protein (216aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
13_1_40cm_3_scaffold_12455_13
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9362..10126)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Haloarcula sinaiiensis ATCC 33800 RepID=M0K1M7_9EURY
HPr kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
hypothetical protein
13_1_40cm_3_scaffold_12455_14
unknown

Not on your lists

comp(10477..10797)
DNA (321bp) protein (107aa)

This feature has no annotations

Displaying 14 items

View Taxonomy