ggKbase home page

13_1_40cm_3_scaffold_20468

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_20468_1
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(2..1378)
DNA (1377bp) protein (459aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021D2_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
hypothetical protein
13_1_40cm_3_scaffold_20468_2
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(1538..1768)
DNA (231bp) protein (77aa)
Putative PQQ enzyme repeat protein n=1 Tax=uncultured marine microorganism HF4000_009L19 RepID=B3T1E8_9ZZZZ
pyrrolo-quinoline quinone Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
pyrrolo-quinoline quinone
13_1_40cm_3_scaffold_20468_3
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(1783..3129)
DNA (1347bp) protein (449aa)
Putative PQQ enzyme repeat protein n=1 Tax=uncultured marine microorganism HF4000_009L19 RepID=B3T1E8_9ZZZZ
pyrrolo-quinoline quinone Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
pyrrolo-quinoline quinone
13_1_40cm_3_scaffold_20468_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3925..4599)
DNA (675bp) protein (225aa)
ABC transporter; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
phosphonate-transporting ATPase (EC:3.6.3.28) id=12555141 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphonate-transporting ATPase (EC:3.6.3.28)
13_1_40cm_3_scaffold_20468_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(4690..5922)
DNA (1233bp) protein (411aa)
lipoprotein releasing system transmembrane protein LolC/E family; K09808 lipoprotein-releasing system permease protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
lipoprotein releasing system transmembrane protein LolC/E family; K09808 lipoprotein-releasing system permease protein id=12555140 bin=CNBR_ACIDO species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lipoprotein releasing system, transmembrane protein, LolC/E family
13_1_40cm_3_scaffold_20468_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(6047..7267)
DNA (1221bp) protein (407aa)
lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
lysS; Lysyl-tRNA synthetase (LysRS) (EC:6.1.1.6) id=12555139 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lysS; lysyl-tRNA ligase
13_1_40cm_3_scaffold_20468_7
unknown

Not on your lists

comp(7487..7618)
DNA (132bp) protein (44aa)

This feature has no annotations

13_1_40cm_3_scaffold_20468_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(7615..8076)
DNA (462bp) protein (154aa)
NusB antitermination factor; K03625 N utilization substance protein B Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
NusB antitermination factor; K03625 N utilization substance protein B id=12555138 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
NusB antitermination factor
13_1_40cm_3_scaffold_20468_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(8150..8617)
DNA (468bp) protein (156aa)
riboflavin synthase; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=RISB_SYNFM
riboflavin synthase
13_1_40cm_3_scaffold_20468_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8821..9603)
DNA (783bp) protein (261aa)
short chain enoyl-CoA hydratase; K01715 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Short chain enoyl-CoA hydratase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISD5_KORVE
short chain enoyl-CoA hydratase
13_1_40cm_3_scaffold_20468_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(9721..9894)
DNA (174bp) protein (58aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_3_scaffold_20468_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(9916..10176)
DNA (261bp) protein (87aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein id=12555134 bin=CNBR_ACIDO species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Displaying 12 items

View Taxonomy