ggKbase home page

13_1_40cm_3_scaffold_2033

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2033_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

1..1167
DNA (1167bp) protein (389aa)
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:3.5.4.25 4.1.2.-); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] Tax=RIFC
GTP cyclohydrolase II; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] id=12555336 bin=CNBR_ACIDO species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
ribA; 3,4-dihydroxy-2-butanone-4-phosphate synthase and GTP cyclohydrolase II
13_1_40cm_3_scaffold_2033_2
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1286..1555
DNA (270bp) protein (90aa)
Thiol-disulfide oxidoreductase DCC n=1 Tax=Paenibacillus lactis 154 RepID=G4HMG8_9BACL
Thiol-disulfide oxidoreductase DCC {ECO:0000313|EMBL:EHB54495.1}; TaxID=743719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus lactis 154.;
hypothetical protein
13_1_40cm_3_scaffold_2033_3
unknown

Not on your lists

1665..1946
DNA (282bp) protein (94aa)

This feature has no annotations

13_1_40cm_3_scaffold_2033_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


2164..3537
DNA (1374bp) protein (458aa)
signal recognition particle subunit FFH/SRP54 (srp54); K03106 signal recognition particle subunit SRP54 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
signal recognition particle subunit FFH/SRP54 (srp54); K03106 signal recognition particle subunit SRP54 id=12555334 bin=CNBR_ACIDO species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
signal recognition particle protein
13_1_40cm_3_scaffold_2033_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


3630..3926
DNA (297bp) protein (99aa)
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 id=12555333 bin=CNBR_ACIDO species=Sulfobacillus acidophilus genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
30S ribosomal protein S16
13_1_40cm_3_scaffold_2033_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

4080..4325
DNA (246bp) protein (82aa)
hypothetical protein; K06960 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein; K06960 id=12555332 bin=CNBR_ACIDO species=Clostridium sp. CAG:43 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RNA binding protein
13_1_40cm_3_scaffold_2033_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

4453..4986
DNA (534bp) protein (178aa)
ribosome maturation factor rimM; K02860 16S rRNA processing protein RimM Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
16S rRNA-processing protein RimM id=12555331 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
16S rRNA processing protein RimM
13_1_40cm_3_scaffold_2033_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

4998..5792
DNA (795bp) protein (265aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] id=24448829 bin=RBG_19FT_COMBO_GAL15_69_19 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
trmD; tRNA (guanine-N(1)-)-methyltransferase
13_1_40cm_3_scaffold_2033_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


5779..6126
DNA (348bp) protein (116aa)
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 id=12555329 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
50S ribosomal protein L19
13_1_40cm_3_scaffold_2033_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

6221..6844
DNA (624bp) protein (208aa)
Ribonuclease H (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
ribonuclease h (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] id=12555328 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
rnhB; ribonuclease HII (EC:3.1.26.4)
13_1_40cm_3_scaffold_2033_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6853..9084
DNA (2232bp) protein (744aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein id=16960858 bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_3_scaffold_2033_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

9137..9355
DNA (219bp) protein (73aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024M3_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein
13_1_40cm_3_scaffold_2033_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9352..9693
DNA (342bp) protein (114aa)
thiamine monophosphate synthase (EC:2.5.1.3); K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
thiE; thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I6Y5_METCZ
Displaying 13 items

View Taxonomy