ggKbase home page

13_1_40cm_3_scaffold_2210

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2210_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2..1534
DNA (1533bp) protein (511aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] id=12557837 bin=CNBR_ACIDO species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
thrS; threonyl-tRNA synthetase
13_1_40cm_3_scaffold_2210_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

1542..2096
DNA (555bp) protein (185aa)
translation initiation factor 3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
translation initiation factor 3; K02520 translation initiation factor IF-3 id=12557838 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
translation initiation factor 3
13_1_40cm_3_scaffold_2210_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


2167..2373
DNA (207bp) protein (69aa)
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 id=12557839 bin=CNBR_ACIDO species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpmI; 50S ribosomal protein L35
13_1_40cm_3_scaffold_2210_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists


2386..2754
DNA (369bp) protein (123aa)
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 id=12557840 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplT; 50S ribosomal protein L20
13_1_40cm_3_scaffold_2210_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


2848..3921
DNA (1074bp) protein (358aa)
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
phenylalanyl-tRNA synthetase subunit alpha id=12557841 bin=CNBR_ACIDO species=Thioalkalivibrio thiocyanoxidans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_3_scaffold_2210_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


3998..6076
DNA (2079bp) protein (693aa)
phenylalanyl-tRNA synthetase subunit beta, non-spirochete bacterial (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phenylalanyl-tRNA synthetase subunit beta, non-spirochete bacterial (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=12557842 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
13_1_40cm_3_scaffold_2210_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

6083..6361
DNA (279bp) protein (93aa)
id=12557843 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
id=12557843 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_3_scaffold_2210_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

6438..6731
DNA (294bp) protein (98aa)
hypothetical protein; K09888 cell division protein ZapA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
putative cell division protein ZapA; K09888 cell division protein ZapA id=12557844 bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_3_scaffold_2210_9
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

6857..7117
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037EDD11
hypothetical protein Tax=RBG_13_Planctomycetes_62_9_curated
hypothetical protein
13_1_40cm_3_scaffold_2210_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

7570..9144
DNA (1575bp) protein (525aa)
metal dependent phosphohydrolase (EC:3.1.4.16)
Ribonuclease Y n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F2J5_9FIRM rbh
hypothetical protein; K06950 uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_3_scaffold_2210_11
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

9141..10289
DNA (1149bp) protein (383aa)
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
thiamine-monophosphate kinase; K00946 thiamine-monophosphate kinase [EC:2.7.4.16] id=12557845 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
thiamine-monophosphate kinase (EC:2.7.4.16)
13_1_40cm_3_scaffold_2210_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

10286..10792
DNA (507bp) protein (169aa)
hypothetical protein; K09928 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Putative uncharacterized protein id=3918068 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
13_1_40cm_3_scaffold_2210_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11049..11336
DNA (288bp) protein (96aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
3D domain-containing protein id=12557846 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_3_scaffold_2210_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11478..13364)
DNA (1887bp) protein (629aa)
ABC transporter, ATPase subunit; K06147 ATP-binding cassette, subfamily B, bacterial Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial id=24433595 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
ABC transporter ATPase
13_1_40cm_3_scaffold_2210_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(13477..14025)
DNA (549bp) protein (183aa)
ABC transporter related protein n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6Z6K0_MELRP
xenobiotic-transporting ATPase; K06147 ATP-binding cassette, subfamily B, bacterial Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ABC transporter related protein
13_1_40cm_3_scaffold_2210_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(13973..15217)
DNA (1245bp) protein (415aa)
xenobiotic-transporting ATPase; K06147 ATP-binding cassette, subfamily B, bacterial Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ABC transporter, ATPase subunit; K06147 ATP-binding cassette, subfamily B, bacterial id=24506216 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
xenobiotic-transporting ATPase
13_1_40cm_3_scaffold_2210_17
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

15409..15888
DNA (480bp) protein (160aa)
Carbon starvation protein, predicted membrane protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJM9_SINAD
carbon starvation protein, CstA family; K06200 carbon starvation protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
carbon starvation membrane protein
13_1_40cm_3_scaffold_2210_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

15888..17192
DNA (1305bp) protein (435aa)
carbon starvation protein CstA; K06200 carbon starvation protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Carbon starvation protein id=4998125 bin=GWA2_Ignavibacteria_55_11 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
carbon starvation protein CstA
13_1_40cm_3_scaffold_2210_19
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

17661..18008
DNA (348bp) protein (116aa)
PadR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PadR family transcriptional regulator id=12555194 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PadR family transcriptional regulator
13_1_40cm_3_scaffold_2210_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

18005..20932
DNA (2928bp) protein (976aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01P15_SOLUE rbh
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_3_scaffold_2210_21
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20844..21224)
DNA (381bp) protein (127aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J7N8_FRASU
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ADP79647.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c
13_1_40cm_3_scaffold_2210_22
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21436..22062
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI000366BA25
AraC family transcriptional regulator Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
AraC family transcriptional regulator
13_1_40cm_3_scaffold_2210_23
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(21900..23327)
DNA (1428bp) protein (476aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WPK3_9BURK
hypothetical membrane protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
13_1_40cm_3_scaffold_2210_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

23593..24813
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAU6_GEMAT rbh
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
Displaying 24 items

View Taxonomy