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13_1_40cm_3_scaffold_2689

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2689_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

1..861
DNA (861bp) protein (287aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
Amylopullulanase id=4319235 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
glycoside hydrolase family protein
13_1_40cm_3_scaffold_2689_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1050..1871)
DNA (822bp) protein (274aa)
ParB-like partition protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ParB-like partition protein id=12554082 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
ParB-like partition protein
13_1_40cm_3_scaffold_2689_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(1864..2619)
DNA (756bp) protein (252aa)
chromosome partitioning ATPase; K03496 chromosome partitioning protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
chromosome partitioning ATPase; K03496 chromosome partitioning protein id=12554081 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
chromosome partitioning ATPase
13_1_40cm_3_scaffold_2689_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2671..3156)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000364E73D
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
13_1_40cm_3_scaffold_2689_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3161..4555)
DNA (1395bp) protein (465aa)
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA id=12554079 bin=CNBR_ACIDO species=Chromobacterium violaceum genus=Chromobacterium taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
MiaB family RNA modification protein
13_1_40cm_3_scaffold_2689_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(4559..6325)
DNA (1767bp) protein (589aa)
DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N) id=12554078 bin=CNBR_ACIDO species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
recN; DNA repair ATPase RecN
13_1_40cm_3_scaffold_2689_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

6440..7213
DNA (774bp) protein (258aa)
protein TolQ; K03562 biopolymer transport protein TolQ Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
MotA/TolQ/ExbB proton channel; K03562 biopolymer transport protein TolQ id=12554077 bin=CNBR_ACIDO species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
MotA/TolQ/ExbB proton channel
13_1_40cm_3_scaffold_2689_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7214..7675
DNA (462bp) protein (154aa)
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
protein TolR; K03560 biopolymer transport protein TolR id=12554076 bin=CNBR_ACIDO species=Sphingopyxis sp. MC1 genus=Sphingopyxis taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
biopolymer transport protein ExbD/TolR
13_1_40cm_3_scaffold_2689_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

7679..8458
DNA (780bp) protein (260aa)
TonB-like protein; K03832 periplasmic protein TonB Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
TonB family protein id=12554075 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_3_scaffold_2689_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

8455..8733
DNA (279bp) protein (93aa)
TolB-like protein; K03641 TolB protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_3_scaffold_2689_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

8706..9758
DNA (1053bp) protein (351aa)
tolB protein; K03641 TolB protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
beta-propeller repeat-containing to-pal system protein TolB; K03641 TolB protein id=12554074 bin=CNBR_ACIDO species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
WD40 domain-containing protein
13_1_40cm_3_scaffold_2689_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

9770..10345
DNA (576bp) protein (192aa)
OmpA/MotB protein; K03640 peptidoglycan-associated lipoprotein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
peptidoglycan-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein id=12554073 bin=CNBR_ACIDO species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
OmpA/MotB domain protein
13_1_40cm_3_scaffold_2689_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

10350..11189
DNA (840bp) protein (280aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein id=12554072 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_3_scaffold_2689_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11340..11780
DNA (441bp) protein (147aa)
ssb-1; single-strand binding protein; K03111 single-strand DNA-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
single-strand binding protein; K03111 single-strand DNA-binding protein id=12554071 bin=CNBR_ACIDO species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ssb-2; ssDNA-binding protein
13_1_40cm_3_scaffold_2689_15

Not on your lists

11722..12402
DNA (681bp) protein (227aa)
Threonine ammonia-lyase (EC:4.3.1.19)
Threonine ammonia-lyase {ECO:0000313|EMBL:AEN06953.1}; EC=4.3.1.19 {ECO:0000313|EMBL:AEN06953.1};; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
Threonine ammonia-lyase n=1 Tax=halophilic archaeon DL31 RepID=G2MN24_9ARCH
13_1_40cm_3_scaffold_2689_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(12671..13042)
DNA (372bp) protein (124aa)
cupin domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
cupin domain-containing protein id=12554070 bin=CNBR_ACIDO species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cupin domain-containing protein
13_1_40cm_3_scaffold_2689_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(13039..14811)
DNA (1773bp) protein (591aa)
phosphoenolpyruvate--protein phosphotransferase; K08483 phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
phosphoenolpyruvate-protein phosphotransferase PtsI id=12554069 bin=CNBR_ACIDO species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
13_1_40cm_3_scaffold_2689_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(14811..15155)
DNA (345bp) protein (115aa)
Phosphotransferase system, phosphocarrier protein HPr n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8T5Z2_9GAMM
ptsH; phosphocarrier protein HPr; K11189 phosphocarrier protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phosphotransferase system, phosphocarrier protein HPr
13_1_40cm_3_scaffold_2689_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(15152..15604)
DNA (453bp) protein (151aa)
PTS system transporter subunit IIA (EC:2.7.1.69); K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PTS system transporter subunit IIA (EC:2.7.1.69); K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69] id=12554067 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PTS system transporter subunit IIA (EC:2.7.1.69)
Displaying 19 items

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