ggKbase home page

13_1_40cm_3_scaffold_3209

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_3209_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(1..669)
-----------------
DNA (669bp)
protein (223aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YN6_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_3_scaffold_3209_2
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(803..3289)
-----------------
DNA (2487bp)
protein (829aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A83_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
hypothetical protein
13_1_40cm_3_scaffold_3209_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

3312..5546
-----------------
DNA (2235bp)
protein (745aa)
peptidase S9 n=1 Tax=Spirosoma panaciterrae RepID=UPI00036D5361
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:CDM65232.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylal
peptidase S9
13_1_40cm_3_scaffold_3209_4
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(5626..6264)
-----------------
DNA (639bp)
protein (213aa)
Glr1418 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NKQ9_GLOVI
hypothetical protein
Glr1418 protein {ECO:0000313|EMBL:BAC89359.1}; TaxID=251221 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).;"
13_1_40cm_3_scaffold_3209_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

6406..6741
-----------------
DNA (336bp)
protein (112aa)
PadR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PadR family transcriptional regulator id=12554711 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PadR family transcriptional regulator
13_1_40cm_3_scaffold_3209_6
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

6734..8263
-----------------
DNA (1530bp)
protein (510aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01X61_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ85754.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
13_1_40cm_3_scaffold_3209_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

8263..9363
-----------------
DNA (1101bp)
protein (367aa)
ABC efflux pump, inner membrane subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQ02_KORVE
ABC efflux pump, inner membrane subunit Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
permease
13_1_40cm_3_scaffold_3209_8
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(10156..10374)
-----------------
DNA (219bp)
protein (73aa)
Uncharacterized protein {ECO:0000313|EMBL:ENO11788.1}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-C06.;"
13_1_40cm_3_scaffold_3209_9
unknown

Not on your lists

10652..11383
-----------------
DNA (732bp)
protein (244aa)

This feature has no annotations

13_1_40cm_3_scaffold_3209_10

Not on your lists

11547..11786
-----------------
DNA (240bp)
protein (80aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL75717.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_40cm_3_scaffold_3209_11
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11897..12601
-----------------
DNA (705bp)
protein (235aa)
DeoR faimly transcriptional regulator n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HW11_PSEST
DNA-binding protein
DeoR faimly transcriptional regulator {ECO:0000313|EMBL:EQM79705.1}; TaxID=1333856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pse
13_1_40cm_3_scaffold_3209_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(12685..13521)
-----------------
DNA (837bp)
protein (279aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00037C254F rbh
putative cyclase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
cyclase family protein
13_1_40cm_3_scaffold_3209_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13646..14212)
-----------------
DNA (567bp)
protein (189aa)
Thiamine pyrophosphate protein domain protein TPP-binding n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TTW0_9CHLR
thiamine pyrophosphate TPP-binding domain-containing protein
Thiamine pyrophosphate TPP-binding domain-containing protein {ECO:0000313|EMBL:AHG88070.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_3209_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14393..14830)
-----------------
DNA (438bp)
protein (146aa)
Sulfopyruvate decarboxylase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TTW1_9CHLR
thiamine pyrophosphate TPP-binding domain-containing protein
Thiamine pyrophosphate TPP-binding domain-containing protein {ECO:0000313|EMBL:AHG88071.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_3209_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14868..15455
-----------------
DNA (588bp)
protein (196aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037FA7F2
sugar phosphate permease
Sugar phosphate permease {ECO:0000313|EMBL:AGA25327.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera ac
13_1_40cm_3_scaffold_3209_16
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

15649..16224
-----------------
DNA (576bp)
protein (192aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037FA7F2
sugar phosphate permease Tax=RBG_16_Aminicenantes_63_16_curated
sugar phosphate permease
13_1_40cm_3_scaffold_3209_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(16108..16479)
-----------------
DNA (372bp)
protein (124aa)
hypothetical protein id=12556848 bin=CNBR_ACIDO species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_3_scaffold_3209_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

16684..17085
-----------------
DNA (402bp)
protein (134aa)
multidrug ABC transporter substrate-binding protein n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B370B4
permease
Permease {ECO:0000313|EMBL:AHG88486.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_3209_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(16905..17696)
-----------------
DNA (792bp)
protein (264aa)
Putative cyclase n=1 Tax=uncultured marine microorganism HF4000_APKG8K5 RepID=B3TB50_9ZZZZ rbh
Kynurenine formamidase {ECO:0000313|EMBL:CDM65951.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
cyclase family protein
13_1_40cm_3_scaffold_3209_20
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(17709..18116)
-----------------
DNA (408bp)
protein (136aa)
Alpha/beta hydrolase fold-3 domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q026J1_SOLUE
alpha/beta hydrolase domain-containing protein
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:ABJ83078.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus So
Displaying 20 items

View Taxonomy